Fabio Pardi

Publication Activity (10 Years)

Years Active: 2002-2023
Publications (10 Years): 13

Top Topics

Phylogenetic Analysis

Multiple Sequence Alignment

Top Venues

PLoS Comput. Biol.

Publications

Nikolai Romashchenko, Benjamin Linard, Fabio Pardi, Eric Rivals
-mers. Bioinform. 39 (12) (2023)
Nikolai Romashchenko, Benjamin Linard, Eric Rivals, Fabio Pardi
Computing Phylo-$k$k-Mers. IEEE ACM Trans. Comput. Biol. Bioinform. 20 (5) (2023)
Benjamin Linard, Nikolai Romashchenko, Fabio Pardi, Eric Rivals
PEWO: a collection of workflows to benchmark phylogenetic placement. Bioinform. 36 (21) (2021)
Guillaume E. Scholz, Benjamin Linard, Nikolai Romashchenko, Eric Rivals, Fabio Pardi
Rapid screening and detection of inter-type viral recombinants using phylo-k-mers. Bioinform. 36 (22-23) (2021)
Nicola De Maio, Alexander V. Alekseyenko, William J. Coleman-Smith, Fabio Pardi, Marc A. Suchard, Asif U. Tamuri, Jakub Truszkowski, Nick Goldman
A phylogenetic approach for weighting genetic sequences. BMC Bioinform. 22 (1) (2021)
Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo. PLoS Comput. Biol. 17 (9) (2021)
Jakub Truszkowski, Céline Scornavacca, Fabio Pardi
Computing the probability of gene trees concordant with the species tree in the multispecies coalescent. CoRR (2020)
Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca
Cutting an alignment with Ockham's razor. CoRR (2019)
Benjamin Linard, Krister M. Swenson, Fabio Pardi
Rapid alignment-free phylogenetic identification of metagenomic sequences. Bioinform. 35 (18) (2019)
Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel
Finding the most parsimonious or likely tree in a network with respect to an alignment. CoRR (2017)
Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca
Rearrangement moves on rooted phylogenetic networks. PLoS Comput. Biol. 13 (8) (2017)
Manuel Binet, Olivier Gascuel, Céline Scornavacca, Emmanuel J. P. Douzery, Fabio Pardi
Fast and accurate branch lengths estimation for phylogenomic trees. BMC Bioinform. 17 (2016)
Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca
Do branch lengths help to locate a tree in a phylogenetic network? CoRR (2016)
Fabio Pardi, Céline Scornavacca
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable. PLoS Comput. Biol. 11 (4) (2015)
Noga Alon, Benny Chor, Fabio Pardi, Anat Rapoport
Approximate Maximum Parsimony and Ancestral Maximum Likelihood. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (1) (2010)
Bui Quang Minh, Fabio Pardi, Steffen Klaere, Arndt von Haeseler
Budgeted Phylogenetic Diversity on Circular Split Systems. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (1) (2009)
Michael L. Tress, Jan-Jaap Wesselink, Adam Frankish, Gonzalo López, Nick Goldman, Ari Löytynoja, Tim Massingham, Fabio Pardi, Simon Whelan, Jennifer L. Harrow, Alfonso Valencia
Determination and validation of principal gene products. Bioinform. 24 (1) (2008)
Fabio Pardi, Douglas F. Levinson, Cathryn M. Lewis
GSMA: software implementation of the genome search meta-analysis method. Bioinform. 21 (24) (2005)
Fabio Pardi
Category Similarity as a Predictor for SVM Learning Performance. FLAIRS Conference (2002)