Céline Scornavacca

Publication Activity (10 Years)

Years Active: 2007-2024
Publications (10 Years): 48

Top Venues

CoRR

Bioinform.

PLoS Comput. Biol.

BMC Bioinform.

Montpellier 2 University, France (PHD)

Education History

Montpellier 2 University, France

PHD

Publications

Leo van Iersel, Mark Jones, Jannik Schestag, Céline Scornavacca, Mathias Weller
Maximizing Network Phylogenetic Diversity. CoRR (2024)
Reza Kalhor, Guillaume Beslon, Manuel Lafond, Céline Scornavacca
Classifying the Post-duplication Fate of Paralogous Genes. RECOMB-CG (2023)
Céline Scornavacca, Mathias Weller
Treewidth-based algorithms for the small parsimony problem on networks. Algorithms Mol. Biol. 17 (1) (2022)
Sarah Lutteropp, Céline Scornavacca, Alexey M. Kozlov, Benoit Morel, Alexandros Stamatakis
NetRAX: accurate and fast maximum likelihood phylogenetic network inference. Bioinform. 38 (15) (2022)
Céline Scornavacca, Mathias Weller
Treewidth-Based Algorithms for the Small Parsimony Problem on Networks. WABI (2021)
Charles-Elie Rabier, Vincent Berry, Marnus Stoltz, João D. Santos, Wensheng Wang, Jean-Christophe Glaszmann, Fabio Pardi, Céline Scornavacca
On the inference of complex phylogenetic networks by Markov Chain Monte-Carlo. PLoS Comput. Biol. 17 (9) (2021)
Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Bioinform. 36 (18) (2020)
Vincent Berry, Céline Scornavacca, Mathias Weller
Scanning Phylogenetic Networks Is NP-hard. SOFSEM (2020)
Joan Carles Pons, Céline Scornavacca, Gabriel Cardona
k LGT Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17 (1) (2020)
Jakub Truszkowski, Céline Scornavacca, Fabio Pardi
Computing the probability of gene trees concordant with the species tree in the multispecies coalescent. CoRR (2020)
Mark Jones, Philippe Gambette, Leo van Iersel, Remie Janssen, Steven Kelk, Fabio Pardi, Céline Scornavacca
Cutting an alignment with Ockham's razor. CoRR (2019)
Gabriel Cardona, Joan Carles Pons, Céline Scornavacca
Generation of Binary Tree-Child phylogenetic networks. PLoS Comput. Biol. 15 (9) (2019)
Riccardo Dondi, Manuel Lafond, Céline Scornavacca
Reconciling multiple genes trees via segmental duplications and losses. Algorithms Mol. Biol. 14 (1) (2019)
Gabriel Cardona, Joan Carles Pons, Céline Scornavacca
Generation of Tree-Child phylogenetic networks. CoRR (2019)
Gabriel Cardona, Joan Carles Pons, Céline Scornavacca
Correction: Generation of Binary Tree-Child phylogenetic networks. PLoS Comput. Biol. 15 (10) (2019)
Manuel Lafond, Céline Scornavacca
On the Weighted Quartet Consensus problem. Theor. Comput. Sci. 769 (2019)
David Bryant, Céline Scornavacca
An O(n log n) Time Algorithm for Computing the Path-Length Distance Between Trees. Algorithmica 81 (9) (2019)
Matija Brozovic, Christelle Dantec, Justine Dardaillon, Delphine Dauga, Emmanuel Faure, Mathieu Gineste, Alexandra Louis, Magali Naville, Kazuhiro R. Nitta, Jacques Piette, Wendy Reeves, Céline Scornavacca, Paul Simion, Renaud Vincentelli, Maelle Bellec, Sameh Ben Aicha, Marie Fagotto, Marion Guéroult-Bellone, Maximilian Haeussler, Edwin Jacox, Elijah K. Lowe, Mickaël Mendez, Alexis Roberge, Alberto Stolfi, Rui Yokomori, C. Titus Brown, Christian Cambillau, Lionel A. Christiaen, Frédéric Delsuc, Emmanuel J. P. Douzery, Rémi Dumollard, Takehiro Kusakabe, Kenta Nakai, Hiroki Nishida, Yutaka Satou, Billie J. Swalla, Michael Veeman, Jean-Nicolas Volff, Patrick Lemaire
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets. Nucleic Acids Res. 46 (Database-Issue) (2018)
Riccardo Dondi, Manuel Lafond, Céline Scornavacca
Reconciling Multiple Genes Trees via Segmental Duplications and Losses. WABI (2018)
David Bryant, Céline Scornavacca
An O(n log n) time Algorithm for computing the Path-length Distance between Trees. CoRR (2018)
Riccardo Dondi, Manuel Lafond, Céline Scornavacca
Reconciling Multiple Genes Trees via Segmental Duplications and Losses. CoRR (2018)
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34 (21) (2018)
Manuel Lafond, Céline Scornavacca
On the Weighted Quartet Consensus Problem. CPM (2017)
Mark Jones, Manuel Lafond, Céline Scornavacca
Consistency of orthology and paralogy constraints in the presence of gene transfers. CoRR (2017)
Julia Matsieva, Steven Kelk, Céline Scornavacca, Chris Whidden, Dan Gusfield
A Resolution of the Static Formulation Question for the Problem of Computing the History Bound. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (2) (2017)
Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
Reconstructing Phylogenetic Level-1 Networks from Nondense Binet and Trinet Sets. Algorithmica 77 (1) (2017)
Steven Kelk, Fabio Pardi, Céline Scornavacca, Leo van Iersel
Finding the most parsimonious or likely tree in a network with respect to an alignment. CoRR (2017)
Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller
Constructing a Consensus Phylogeny from a Leaf-Removal Distance (Extended Abstract). SPIRE (2017)
Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca
Rearrangement moves on rooted phylogenetic networks. PLoS Comput. Biol. 13 (8) (2017)
Remie Janssen, Mark Jones, Péter L. Erdös, Leo van Iersel, Céline Scornavacca
Exploring the tiers of rooted phylogenetic network space using tail moves. CoRR (2017)
Cédric Chauve, Mark Jones, Manuel Lafond, Céline Scornavacca, Mathias Weller
Constructing a Consensus Phylogeny from a Leaf-Removal Distance. CoRR (2017)
Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses. Bioinform. 33 (7) (2017)
Matija Brozovic, Cyril Martin, Christelle Dantec, Delphine Dauga, Mickaël Mendez, Paul Simion, Madeline Percher, Baptiste Laporte, Céline Scornavacca, Anna Di Gregorio, Shigeki Fujiwara, Mathieu Gineste, Elijah K. Lowe, Jacques Piette, Claudia Racioppi, Filomena Ristoratore, Yasunori Sasakura, Naohito Takatori, C. Titus Brown, Frédéric Delsuc, Emmanuel J. P. Douzery, Carmela Gissi, Alex McDougall, Hiroki Nishida, Hitoshi Sawada, Billie J. Swalla, Hitoyoshi Yasuo, Patrick Lemaire
ANISEED 2015: a digital framework for the comparative developmental biology of ascidians. Nucleic Acids Res. 44 (Database-Issue) (2016)
François Chevenet, Jean-Philippe Doyon, Céline Scornavacca, Edwin Jacox, Emmanuelle Jousselin, Vincent Berry
SylvX: a viewer for phylogenetic tree reconciliations. Bioinform. 32 (4) (2016)
Manuel Binet, Olivier Gascuel, Céline Scornavacca, Emmanuel J. P. Douzery, Fabio Pardi
Fast and accurate branch lengths estimation for phylogenomic trees. BMC Bioinform. 17 (2016)
Julien Baste, Christophe Paul, Ignasi Sau, Céline Scornavacca
Efficient FPT algorithms for (strict) compatibility of unrooted phylogenetic trees. CoRR (2016)
Philippe Gambette, Leo van Iersel, Steven Kelk, Fabio Pardi, Céline Scornavacca
Do branch lengths help to locate a tree in a phylogenetic network? CoRR (2016)
Steven Kelk, Leo van Iersel, Céline Scornavacca, Mathias Weller
Phylogenetic incongruence through the lens of Monadic Second Order logic. J. Graph Algorithms Appl. 20 (2) (2016)
Julien Baste, Christophe Paul, Ignasi Sau, Céline Scornavacca
Efficient FPT Algorithms for (Strict) Compatibility of Unrooted Phylogenetic Trees. AAIM (2016)
Mark Jones, Christophe Paul, Céline Scornavacca
On the consistency of orthology relationships. BMC Bioinform. 17 (S-14) (2016)
Edwin Jacox, Cédric Chauve, Gergely J. Szöllosi, Yann Ponty, Céline Scornavacca
ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony. Bioinform. 32 (13) (2016)
Leo van Iersel, Steven Kelk, Céline Scornavacca
Kernelizations for the hybridization number problem on multiple nonbinary trees. J. Comput. Syst. Sci. 82 (6) (2016)
Manuel Lafond, Céline Scornavacca
On the Weighted Quartet Consensus problem. CoRR (2016)
Céline Scornavacca, Edwin Jacox, Gergely J. Szöllosi
Joint amalgamation of most parsimonious reconciled gene trees. Bioinform. 31 (6) (2015)
Fabio Pardi, Céline Scornavacca
Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable. PLoS Comput. Biol. 11 (4) (2015)
Steven Kelk, Leo van Iersel, Céline Scornavacca
Phylogenetic incongruence through the lens of Monadic Second Order logic. CoRR (2015)
Mareike Fischer, Leo van Iersel, Steven Kelk, Céline Scornavacca
On Computing the Maximum Parsimony Score of a Phylogenetic Network. SIAM J. Discret. Math. 29 (1) (2015)
Thu-Hien To, Edwin Jacox, Vincent Ranwez, Céline Scornavacca
A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality. BMC Bioinform. 16 (2015)
Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca
A practical approximation algorithm for solving massive instances of hybridization number for binary and nonbinary trees. BMC Bioinform. 15 (2014)
Katharina T. Huber, Leo van Iersel, Vincent Moulton, Céline Scornavacca, Taoyang Wu
Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. CoRR (2014)
Céline Scornavacca, Leo van Iersel, Steven Kelk, David Bryant
The agreement problem for unrooted phylogenetic trees is FPT. J. Graph Algorithms Appl. 18 (3) (2014)
Steven Kelk, Céline Scornavacca
Constructing Minimal Phylogenetic Networks from Softwired Clusters is Fixed Parameter Tractable. Algorithmica 68 (4) (2014)
Yao-ban Chan, Vincent Ranwez, Céline Scornavacca
Reconciliation-based detection of co-evolving gene families. BMC Bioinform. 14 (2013)
Céline Scornavacca, Wojciech Paprotny, Vincent Berry, Vincent Ranwez
Representing a Set of Reconciliations in a Compact Way. J. Bioinform. Comput. Biol. 11 (2) (2013)
Benjamin Albrecht, Céline Scornavacca, Alberto Cenci, Daniel H. Huson
Fast computation of minimum hybridization networks. Bioinform. 28 (2) (2012)
Leo van Iersel, Steven Kelk, Nela Lekic, Céline Scornavacca
A Practical Approximation Algorithm for Solving Massive Instances of Hybridization Number. WABI (2012)
Steven Kelk, Céline Scornavacca
Towards the fixed parameter tractability of constructing minimal phylogenetic networks from arbitrary sets of nonbinary trees CoRR (2012)
Steven Kelk, Leo van Iersel, Nela Lekic, Simone Linz, Céline Scornavacca, Leen Stougie
Cycle Killer...Qu'est-ce que c'est? On the Comparative Approximability of Hybridization Number and Directed Feedback Vertex Set. SIAM J. Discret. Math. 26 (4) (2012)
Steven Kelk, Céline Scornavacca, Leo van Iersel
On the Elusiveness of Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (2) (2012)
Céline Scornavacca, Simone Linz, Benjamin Albrecht
A First Step Toward Computing All Hybridization Networks For Two Rooted Binary Phylogenetic Trees. J. Comput. Biol. 19 (11) (2012)
Céline Scornavacca, Vincent Berry, Vincent Ranwez
Building species trees from larger parts of phylogenomic databases. Inf. Comput. 209 (3) (2011)
Steven Kelk, Céline Scornavacca, Leo van Iersel
On the elusiveness of clusters CoRR (2011)
Steven Kelk, Céline Scornavacca
Constructing minimal phylogenetic networks from softwired clusters is fixed parameter tractable CoRR (2011)
Céline Scornavacca, Franziska Zickmann, Daniel H. Huson
Tanglegrams for rooted phylogenetic trees and networks. Bioinform. 27 (13) (2011)
Steven Kelk, Leo van Iersel, Nela Lekic, Simone Linz, Céline Scornavacca, Leen Stougie
Cycle killer... qu'est-ce que c'est? On the comparative approximability of hybridization number and directed feedback vertex set. CoRR (2011)
Jean-Philippe Doyon, Céline Scornavacca, K. Yu. Gorbunov, Gergely J. Szöllosi, Vincent Ranwez, Vincent Berry
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers. RECOMB-CG (2010)
Céline Scornavacca, Vincent Berry, Vincent Ranwez
From Gene Trees to Species Trees through a Supertree Approach. LATA (2009)
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (3) (2008)
Céline Scornavacca, Vincent Berry, Vincent Lefort, Emmanuel J. P. Douzery, Vincent Ranwez
PhySIC_IST: cleaning source trees to infer more informative supertrees. BMC Bioinform. 9 (2008)
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
The Solution Space of Sorting by Reversals. ISBRA (2007)

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Publication Activity (10 Years)

Top Topics

Top Venues

Céline Scornavacca