Eric Tannier

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 16

Top Topics

Genome Rearrangements

Gene Conversion

Maximum Parsimony

Top Venues

J. Comb. Optim.

Publications

Simon Penel, Hugo Menet, Théo Tricou, Vincent Daubin, Eric Tannier
Thirdkind: displaying phylogenetic encounters beyond 2-level reconciliation. Bioinform. 38 (8) (2022)
Hugo Menet, Vincent Daubin, Eric Tannier
Phylogenetic reconciliation. PLoS Comput. Biol. 18 (11) (2022)
Nicolas Comte, Benoit Morel, Damir Hasic, Laurent Guéguen, Bastien Boussau, Vincent Daubin, Simon Penel, Céline Scornavacca, Manolo Gouy, Alexandros Stamatakis, Eric Tannier, David P. Parsons
Treerecs: an integrated phylogenetic tool, from sequences to reconciliations. Bioinform. 36 (18) (2020)
Adrián A. Davín, Théo Tricou, Eric Tannier, Damien M. de Vienne, Gergely J. Szöllosi
Zombi: a phylogenetic simulator of trees, genomes and sequences that accounts for dead linages. Bioinform. 36 (4) (2020)
Damir Hasic, Eric Tannier
Gene tree reconciliation including transfers with replacement is NP-hard and FPT. J. Comb. Optim. 38 (2) (2019)
Yoann Anselmetti, Wandrille Duchemin, Eric Tannier, Cédric Chauve, Sèverine Bérard
Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes. BMC Genom. 19 (S2) (2018)
Wandrille Duchemin, Guillaume Gence, Anne-Muriel Arigon Chifolleau, Lars Arvestad, Mukul S. Bansal, Vincent Berry, Bastien Boussau, François Chevenet, Nicolas Comte, Adrián A. Davín, Christophe Dessimoz, David Dylus, Damir Hasic, Diego Mallo, Rémi Planel, David Posada, Céline Scornavacca, Gergely J. Szöllosi, Louxin Zhang, Eric Tannier, Vincent Daubin
RecPhyloXML: a format for reconciled gene trees. Bioinform. 34 (21) (2018)
Damir Hasic, Eric Tannier
Gene tree species tree reconciliation with gene conversion. CoRR (2017)
Guillaume Fertin, Géraldine Jean, Eric Tannier
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes. Algorithms Mol. Biol. 12 (1) (2017)
Damir Hasic, Eric Tannier
Gene tree reconciliation including transfers with replacement is hard and FPT. CoRR (2017)
Edwin Jacox, Mathias Weller, Eric Tannier, Céline Scornavacca
Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses. Bioinform. 33 (7) (2017)
Guillaume Fertin, Géraldine Jean, Eric Tannier
Genome Rearrangements on Both Gene Order and Intergenic Regions. WABI (2016)
Laurent Bulteau, Guillaume Fertin, Eric Tannier
Genome rearrangements with indels in intergenes restrict the scenario space. BMC Bioinform. 17 (S-14) (2016)
Priscila Biller, Carole Knibbe, Guillaume Beslon, Eric Tannier
Comparative Genomics on Artificial Life. CiE (2016)
Magali Semeria, Eric Tannier, Laurent Guéguen
Probabilistic modeling of the evolution of gene synteny within reconciled phylogenies. BMC Bioinform. 16 (S14) (2015)
Priscila Biller, Laurent Guéguen, Eric Tannier
Moments of genome evolution by Double Cut-and-Join. BMC Bioinform. 16 (S14) (2015)
István Miklós, Sándor Z. Kiss, Eric Tannier
Counting and sampling SCJ small parsimony solutions. Theor. Comput. Sci. 552 (2014)
Ashok Rajaraman, Eric Tannier, Cédric Chauve
FPSAC: fast phylogenetic scaffolding of ancient contigs. Bioinform. 29 (23) (2013)
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
Linearization of ancestral multichromosomal genomes. CTW (2013)
István Miklós, Sándor Z. Kiss, Eric Tannier
On sampling SCJ rearrangement scenarios CoRR (2013)
Manuel Lafond, Magali Semeria, Krister M. Swenson, Eric Tannier, Nadia El-Mabrouk
Gene tree correction guided by orthology. BMC Bioinform. 14 (S-15) (2013)
Murray Patterson, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier
Lateral gene transfer, rearrangement, reconciliation. BMC Bioinform. 14 (S-15) (2013)
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
Linearization of ancestral multichromosomal genomes. BMC Bioinform. 13 (S-19) (2012)
Bradley R. Jones, Ashok Rajaraman, Eric Tannier, Cédric Chauve
ANGES: reconstructing ANcestral GEnomeS maps. Bioinform. 28 (18) (2012)
István Miklós, Eric Tannier
Approximating the number of Double Cut-and-Join scenarios. Theor. Comput. Sci. 439 (2012)
Sèverine Bérard, Coralie Gallien, Bastien Boussau, Gergely J. Szöllosi, Vincent Daubin, Eric Tannier
Evolution of gene neighborhoods within reconciled phylogenies. Bioinform. 28 (18) (2012)
Matthias Bernt, Kun-Mao Chao, Jyun-Wei Kao, Martin Middendorf, Eric Tannier
Preserving Inversion Phylogeny Reconstruction. WABI (2012)
Haris Gavranovic, Cédric Chauve, Jérôme Salse, Eric Tannier
Mapping ancestral genomes with massive gene loss: A matrix sandwich problem. Bioinform. 27 (13) (2011)
Aïda Ouangraoua, Eric Tannier, Cédric Chauve
Reconstructing the architecture of the ancestral amniote genome. Bioinform. 27 (19) (2011)
Christian Baudet, Claire Lemaitre, Zanoni Dias, Christian Gautier, Eric Tannier, Marie-France Sagot
Cassis: detection of genomic rearrangement breakpoints. Bioinform. 26 (15) (2010)
Haris Gavranovic, Eric Tannier
Guided Genome Halving: Provably Optimal Solutions Provide Good Insights into the Preduplication Ancestral Genome of Saccharomyces Cerevisiae. Pacific Symposium on Biocomputing (2010)
Sophie S. Abby, Eric Tannier, Manolo Gouy, Vincent Daubin
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests. BMC Bioinform. 11 (2010)
Cédric Chauve, Haris Gavranovic, Aïda Ouangraoua, Eric Tannier
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods II. J. Comput. Biol. 17 (9) (2010)
István Miklós, Eric Tannier
Bayesian sampling of genomic rearrangement scenarios via double cut and join. Bioinform. 26 (24) (2010)
Eric Tannier
Yeast Ancestral Genome Reconstructions: The Possibilities of Computational Methods. RECOMB-CG (2009)
Eric Tannier, Chunfang Zheng, David Sankoff
Multichromosomal median and halving problems under different genomic distances. BMC Bioinform. 10 (2009)
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
Computation of Perfect DCJ Rearrangement Scenarios with Linear and Circular Chromosomes. J. Comput. Biol. 16 (10) (2009)
Aïda Ouangraoua, Frédéric Boyer, Andrew W. McPherson, Eric Tannier, Cédric Chauve
Prediction of Contiguous Regions in the Amniote Ancestral Genome. ISBRA (2009)
Sèverine Bérard, Annie Chateau, Cédric Chauve, Christophe Paul, Eric Tannier
Perfect DCJ Rearrangement. RECOMB-CG (2008)
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (3) (2008)
Renaud Lenne, Christine Solnon, Thomas Stützle, Eric Tannier, Mauro Birattari
Reactive Stochastic Local Search Algorithms for the Genomic Median Problem. EvoCOP (2008)
Eric Tannier, Chunfang Zheng, David Sankoff
Multichromosomal Genome Median and Halving Problems. WABI (2008)
Claire Lemaitre, Eric Tannier, Christian Gautier, Marie-France Sagot
Precise detection of rearrangement breakpoints in mammalian chromosomes. BMC Bioinform. 9 (2008)
Cédric Chauve, Eric Tannier
A Methodological Framework for the Reconstruction of Contiguous Regions of Ancestral Genomes and Its Application to Mammalian Genomes. PLoS Comput. Biol. 4 (11) (2008)
Eric Tannier, Anne Bergeron, Marie-France Sagot
Advances on sorting by reversals. Discret. Appl. Math. 155 (6-7) (2007)
Yoan Diekmann, Marie-France Sagot, Eric Tannier
Evolution under Reversals: Parsimony and Conservation of Common Intervals. IEEE ACM Trans. Comput. Biol. Bioinform. 4 (2) (2007)
Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier
The Solution Space of Sorting by Reversals. ISBRA (2007)
Marie-France Sagot, Eric Tannier
Perfect Sorting by Reversals. COCOON (2005)
András Sebö, Eric Tannier
On Metric Generators of Graphs. Math. Oper. Res. 29 (2) (2004)
Eric Tannier, Marie-France Sagot
Sorting by Reversals in Subquadratic Time. CPM (2004)
Sylvain Gravier, Mehdi Mhalla, Eric Tannier
On a modular domination game. Theor. Comput. Sci. 306 (1-3) (2003)
András Sebö, Eric Tannier
Connected Joins in Graphs. IPCO (2001)