Roland Wittler

Publication Activity (10 Years)

Years Active: 2009-2021
Publications (10 Years): 14

Top Topics

Agglomerative Clustering

Sequenced Genomes

Maximum Parsimony

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

Publications

Andreas Rempel, Roland Wittler
SANS serif: alignment-free, whole-genome-based phylogenetic reconstruction. Bioinform. 37 (24) (2021)
Tizian Schulz, Roland Wittler, Sven Rahmann, Faraz Hach, Jens Stoye
Detecting high-scoring local alignments in pangenome graphs. Bioinform. 37 (16) (2021)
Roland Wittler
Alignment- and reference-free phylogenomics with colored de Bruijn graphs. Algorithms Mol. Biol. 15 (1) (2020)
Nina Luhmann, Manuel Lafond, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. IEEE ACM Trans. Comput. Biol. Bioinform. 16 (4) (2019)
Roland Wittler
Alignment- and reference-free phylogenomics with colored de-Bruijn graphs. CoRR (2019)
Roland Wittler
Alignment- and Reference-Free Phylogenomics with Colored de Bruijn Graphs. WABI (2019)
Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (6) (2018)
Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach
Dynamic Alignment-Free and Reference-Free Read Compression. J. Comput. Biol. 25 (7) (2018)
Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis Antonio Brasil Kowada, Jens Stoye
Fast and Simple Jumbled Indexing for Binary RLE Strings. CoRR (2017)
Luís Felipe I. Cunha, Simone Dantas, Travis Gagie, Roland Wittler, Luis Antonio Brasil Kowada, Jens Stoye
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings. CPM (2017)
Guillaume Holley, Roland Wittler, Jens Stoye, Faraz Hach
Dynamic Alignment-Free and Reference-Free Read Compression. RECOMB (2017)
Guillaume Holley, Roland Wittler, Jens Stoye
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage. Algorithms Mol. Biol. 11 (2016)
Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve
The SCJ small parsimony problem for weighted gene adjacencies (Extended version). CoRR (2016)
Nina Luhmann, Annelyse Thévenin, Aïda Ouangraoua, Roland Wittler, Cédric Chauve
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies. ISBRA (2016)
Roland Wittler, Tobias Marschall, Alexander Schönhuth, Veli Mäkinen
Repeat- and error-aware comparison of deletions. Bioinform. 31 (18) (2015)
Guillaume Holley, Roland Wittler, Jens Stoye
Bloom Filter Trie - A Data Structure for Pan-Genome Storage. WABI (2015)
Nina Luhmann, Cédric Chauve, Jens Stoye, Roland Wittler
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework. BSB (2014)
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
Linearization of ancestral multichromosomal genomes. CTW (2013)
Roland Wittler
Unraveling overlapping deletions by agglomerative clustering. BMC Genom. 14 (S-1) (2013)
Roland Wittler
Correction: Unraveling overlapping deletions by agglomerative clustering. BMC Genom. 14 (S-1) (2013)
Ján Manuch, Murray Patterson, Roland Wittler, Cédric Chauve, Eric Tannier
Linearization of ancestral multichromosomal genomes. BMC Bioinform. 13 (S-19) (2012)
Roland Wittler, Ján Manuch, Murray Patterson, Jens Stoye
Consistency of Sequence-Based Gene Clusters. J. Comput. Biol. 18 (9) (2011)
Roland Wittler, Cédric Chauve
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes. BMC Bioinform. 12 (S-9) (2011)
Cédric Chauve, Ján Manuch, Murray Patterson, Roland Wittler
Tractability Results for the Consecutive-Ones Property with Multiplicity. CPM (2011)
Roland Wittler, Jens Stoye
Consistency of Sequence-Based Gene Clusters. RECOMB-CG (2010)
Jens Stoye, Roland Wittler
A Unified Approach for Reconstructing Ancient Gene Clusters. IEEE ACM Trans. Comput. Biol. Bioinform. 6 (3) (2009)