Tobias Marschall

ORCID

Publication Activity (10 Years)

Years Active: 2006-2023
Publications (10 Years): 20

Top Venues

Dortmund University of Technology (PHD)

Education History

Dortmund University of Technology

PHD

Publications

Konstantinn Bonnet, Tobias Marschall, Daniel Doerr
Correction: Constructing founder sets under allelic and non-allelic homologous recombination. Algorithms Mol. Biol. 18 (1) (2023)
Konstantinn Bonnet, Tobias Marschall, Daniel Doerr
Constructing founder sets under allelic and non-allelic homologous recombination. Algorithms Mol. Biol. 18 (1) (2023)
Fawaz Dabbaghie, Jana Ebler, Tobias Marschall
BubbleGun: enumerating bubbles and superbubbles in genome graphs. Bioinform. 38 (17) (2022)
Konstantinn Bonnet, Tobias Marschall, Daniel Doerr
Constructing Founder Sets Under Allelic and Non-Allelic Homologous Recombination. WABI (2022)
Christina Gros, Ashley D. Sanders, Jan O. Korbel, Tobias Marschall, Peter Ebert
ASHLEYS: automated quality control for single-cell Strand-seq data. Bioinform. 37 (19) (2021)
Mikko Rautiainen, Tobias Marschall
MBG: Minimizer-based sparse de Bruijn Graph construction. Bioinform. 37 (16) (2021)
Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. J. Comput. Biol. 27 (3) (2020)
Mikko Rautiainen, Veli Mäkinen, Tobias Marschall
Bit-parallel sequence-to-graph alignment. Bioinform. 35 (19) (2019)
David Laehnemann, Johannes Köster, Ewa Szczurek, Davis J. McCarthy, Stephanie C. Hicks, Mark D. Robinson, Catalina A. Vallejos, Niko Beerenwinkel, Kieran R. Campbell, Ahmed Mahfouz, Luca Pinello, Pavel Skums, Alexandros Stamatakis, Camille Stephan-Otto Attolini, Samuel Aparicio, Jasmijn A. Baaijens, Marleen Balvert, Buys de Barbanson, Antonio Cappuccio, Giacomo Corleone, Bas E. Dutilh, Maria Florescu, Victor Guryev, Rens Holmer, Katharina Jahn, Thamar Jessurun Lobo, Emma M. Keizer, Indu Khatri, Szymon M. Kielbasa, Jan O. Korbel, Alexey M. Kozlov, Tzu-Hao Kuo, Boudewijn P. F. Lelieveldt, Ion I. Mandoiu, John C. Marioni, Tobias Marschall, Felix Mölder, Amir Niknejad, Lukasz Raczkowski, Marcel J. T. Reinders, Jeroen de Ridder, Antoine-Emmanuel Saliba, Antonios Somarakis, Oliver Stegle, Fabian J. Theis, Huan Yang, Alex Zelikovsky, Alice C. McHardy, Benjamin J. Raphael, Sohrab P. Shah, Alexander Schönhuth
12 Grand Challenges in Single-Cell Data Science. PeerJ Prepr. 7 (2019)
Ali Ghaffaari, Tobias Marschall
Fully-sensitive seed finding in sequence graphs using a hybrid index. Bioinform. 35 (14) (2019)
Maryam Ghareghani, David Porubsky, Ashley D. Sanders, Sascha Meiers, Evan E. Eichler, Jan O. Korbel, Tobias Marschall
Strand-seq enables reliable separation of long reads by chromosome via expectation maximization. Bioinform. 34 (13) (2018)
Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. RECOMB (2018)
Shilpa Garg, Mikko Rautiainen, Adam M. Novak, Erik Garrison, Richard Durbin, Tobias Marschall
A graph-based approach to diploid genome assembly. Bioinform. 34 (13) (2018)
Gunnar W. Klau, Tobias Marschall
A Guided Tour to Computational Haplotyping. CiE (2017)
Jana Ebler, Alexander Schönhuth, Tobias Marschall
Genotyping inversions and tandem duplications. Bioinform. 33 (24) (2017)
Tobias Marschall, Noemi E. Passing
Representing Pattern Matching Algorithms by Polynomial-Size Automata. CoRR (2016)
Alexander Schönhuth, Tobias Marschall
Eliminating Blind Spots in Genetic Variant Discovery. ERCIM News 2016 (104) (2016)
Shilpa Garg, Marcel Martin, Tobias Marschall
Read-based phasing of related individuals. Bioinform. 32 (12) (2016)
Kathrin Trappe, Tobias Marschall, Bernhard Y. Renard
Detecting horizontal gene transfer by mapping sequencing reads across species boundaries. Bioinform. 32 (17) (2016)
Andrea Bracciali, Marco Aldinucci, Murray Patterson, Tobias Marschall, Nadia Pisanti, Ivan Merelli, Massimo Torquati
PWHATSHAP: efficient haplotyping for future generation sequencing. BMC Bioinform. 17 (S-11) (2016)
Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth
WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads. J. Comput. Biol. 22 (6) (2015)
Roland Wittler, Tobias Marschall, Alexander Schönhuth, Veli Mäkinen
Repeat- and error-aware comparison of deletions. Bioinform. 31 (18) (2015)
Robin Cijvat, Stefan Manegold, Martin L. Kersten, Gunnar W. Klau, Alexander Schönhuth, Tobias Marschall, Ying Zhang
Genome sequence analysis with MonetDB - A case study on Ebola virus diversity. Datenbank-Spektrum 15 (3) (2015)
Robin Cijvat, Stefan Manegold, Martin L. Kersten, Gunnar W. Klau, Alexander Schönhuth, Tobias Marschall, Ying Zhang
Genome sequence analysis with monetdb: a case study on ebola virus diversity. BTW Workshops (2015)
Thomas Bellitto, Tobias Marschall, Alexander Schönhuth, Gunnar W. Klau
Next generation cluster editing. PeerJ Prepr. 3 (2015)
Murray Patterson, Tobias Marschall, Nadia Pisanti, Leo van Iersel, Leen Stougie, Gunnar W. Klau, Alexander Schönhuth
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads. RECOMB (2014)
Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel
Viral Quasispecies Assembly via Maximal Clique Enumeration. PLoS Comput. Biol. 10 (3) (2014)
Marco Aldinucci, Andrea Bracciali, Tobias Marschall, Murray Patterson, Nadia Pisanti, Massimo Torquati
High-Performance Haplotype Assembly. CIBB (2014)
Armin Töpfer, Tobias Marschall, Rowena A. Bull, Fabio Luciani, Alexander Schönhuth, Niko Beerenwinkel
Viral Quasispecies Assembly via Maximal Clique Enumeration. RECOMB (2014)
Manuel Allhoff, Alexander Schönhuth, Marcel Martin, Ivan G. Costa, Sven Rahmann, Tobias Marschall
Discovering motifs that induce sequencing errors. BMC Bioinform. 14 (S-5) (2013)
Mohammed El-Kebir, Tobias Marschall, Inken Wohlers, Murray Patterson, Jaap Heringa, Alexander Schönhuth, Gunnar W. Klau
Mapping proteins in the presence of paralogs using units of coevolution. BMC Bioinform. 14 (S-15) (2013)
Thomas Bellitto, Tobias Marschall, Alexander Schönhuth, Gunnar W. Klau
Next Generation Cluster Editing. CoRR (2013)
Tobias Marschall, Iman Hajirasouliha, Alexander Schönhuth
MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels. Bioinform. 29 (24) (2013)
Stefan Canzar, Tobias Marschall, Sven Rahmann, Chris Schwiegelshohn
Solving the Minimum String Cover Problem. ALENEX (2012)
Tobias Marschall, Inke Herms, Hans-Michael Kaltenbach, Sven Rahmann
Probabilistic Arithmetic Automata and Their Applications. IEEE ACM Trans. Comput. Biol. Bioinform. 9 (6) (2012)
Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth
CLEVER: clique-enumerating variant finder. Bioinform. 28 (22) (2012)
Tobias Marschall
Construction of minimal deterministic finite automata from biological motifs. Theor. Comput. Sci. 412 (8-10) (2011)
Tobias Marschall, Sven Rahmann
An Algorithm to Compute the Character Access Count Distribution for Pattern Matching Algorithms. Algorithms 4 (4) (2011)
Tobias Marschall, Sven Rahmann
Exact Analysis of Pattern Matching Algorithms with Probabilistic Arithmetic Automata CoRR (2010)
Tobias Marschall, Sven Rahmann
Exact Analysis of Horspool's and Sunday's Pattern Matching Algorithms with Probabilistic Arithmetic Automata. LATA (2010)
Tobias Marschall
Construction of minimal DFAs from biological motifs CoRR (2010)
Tobias Marschall, Inke Herms, Hans-Michael Kaltenbach, Sven Rahmann
Probabilistic Arithmetic Automata and their Applications CoRR (2010)
Tobias Marschall, Sven Rahmann
Speeding Up Exact Motif Discovery by Bounding the Expected Clump Size. WABI (2010)
Tobias Marschall, Sven Rahmann
Efficient exact motif discovery. Bioinform. 25 (12) (2009)
Sven Rahmann, Tobias Marschall, Frank Behler, Oliver Kramer
Modeling evolutionary fitness for DNA motif discovery. GECCO (2009)
Tobias Marschall, Sven Rahmann
Probabilistic Arithmetic Automata and Their Application to Pattern Matching Statistics. CPM (2008)
Thomas Plötz, Gernot A. Fink, Peter Husemann, Sven Kanies, Kai Lienemann, Tobias Marschall, Marcel Martin, Lars Schillingmann, Matthias Steinrucken, Henner Sudek
Automatic Detection of Song Changes in Music Mixes Using Stochastic Models. ICPR (3) (2006)

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Publication Activity (10 Years)

Top Topics

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Tobias Marschall