Stefan Canzar

ORCID

Publication Activity (10 Years)

Years Active: 2006-2024
Publications (10 Years): 16

Top Venues

Henri Poincaré University, Nancy, France (PHD)

Education History

Henri Poincaré University, Nancy, France

PHD

Publications

Mislav Blazevic, Stefan Canzar, Khaled Elbassioni, Domagoj Matijevic
Anti Tai mapping for unordered labeled trees. Inf. Process. Lett. 185 (2024)
Stefan Canzar, Van Hoan Do, Slobodan Jelic, Sören Laue, Domagoj Matijevic, Tomislav Prusina
Metric multidimensional scaling for large single-cell datasets using neural networks. Algorithms Mol. Biol. 19 (1) (2024)
Van Hoan Do, Stefan Canzar
Identifying Cell Types in Single-Cell Multimodal Omics Data via Joint Embedding Learning. KSE (2023)
Antonio Jovanovic, Israa Alqassem, Nathan Chappell, Stefan Canzar, Domagoj Matijevic
Predicting RNA splicing branchpoints. MIPRO (2022)
Olga Lazareva, Stefan Canzar, Kevin Yuan, Jan Baumbach, David B. Blumenthal, Paolo Tieri, Tim Kacprowski, Markus List
BiCoN: network-constrained biclustering of patients and omics data. Bioinform. 37 (16) (2021)
Mislav Blazevic, Stefan Canzar, Khaled M. Elbassioni, Domagoj Matijevic
Anti Tai Mapping for Unordered Labeled Trees. CoRR (2021)
Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. J. Comput. Biol. 27 (3) (2020)
Luka Borozan, Domagoj Matijevic, Stefan Canzar
Properties of the generalized Robinson-Foulds metric. MIPRO (2019)
Van Hoan Do, Mislav Blazevic, Pablo Monteagudo, Luka Borozan, Khaled M. Elbassioni, Sören Laue, Francisca Rojas Ringeling, Domagoj Matijevic, Stefan Canzar
Dynamic Pseudo-time Warping of Complex Single-Cell Trajectories. RECOMB (2019)
Dinanath Sulakhe, Mark D'Souza, Sheng Wang, Sandhya Balasubramanian, Prashanth Athri, Bingqing Xie, Stefan Canzar, Gady Agam, T. Conrad Gilliam, Natalia Maltsev
Exploring the functional impact of alternative splicing on human protein isoforms using available annotation sources. Briefings Bioinform. 20 (5) (2019)
Shounak Chakraborty, Stefan Canzar, Tobias Marschall, Marcel H. Schulz
Chromatyping: Reconstructing Nucleosome Profiles from NOMe Sequencing Data. RECOMB (2018)
Stefan Canzar, Khaled M. Elbassioni, Amr Elmasry, Rajiv Raman
On the approximability of the maximum interval constrained coloring problem. Discret. Optim. 27 (2018)
Stefan Canzar, Steven L. Salzberg
Short Read Mapping: An Algorithmic Tour. Proc. IEEE 105 (3) (2017)
Stefan Canzar, Karlynn E. Neu, Qingming Tang, Patrick C. Wilson, Aly A. Khan
BASIC: BCR assembly from single cells. Bioinform. 33 (3) (2017)
Somaye Hashemifar, Jianzhu Ma, Hammad Naveed, Stefan Canzar, Jinbo Xu
ModuleAlign: module-based global alignment of protein-protein interaction networks. Bioinform. 32 (17) (2016)
Stefan Canzar, Khaled M. Elbassioni, Mitchell Jones, Julián Mestre
Resolving Conflicting Predictions from Multimapping Reads. J. Comput. Biol. 23 (3) (2016)
Stefan Canzar, Sandro Andreotti, David Weese, Knut Reinert, Gunnar W. Klau
CIDANE: Comprehensive Isoform Discovery and Abundance Estimation. RECOMB (2015)
Stefan Canzar, Khaled M. Elbassioni, Gunnar W. Klau, Julián Mestre
On Tree-Constrained Matchings and Generalizations. Algorithmica 71 (1) (2015)
Sandro Andreotti, Knut Reinert, Stefan Canzar
The Duplication-Loss Small Phylogeny Problem: From Cherries to Trees. J. Comput. Biol. 20 (9) (2013)
Tanja Magoc, Stephan Pabinger, Stefan Canzar, Xinyue Liu, Qi Su, Daniela Puiu, Luke J. Tallon, Steven L. Salzberg
GAGE-B: an evaluation of genome assemblers for bacterial organisms. Bioinform. 29 (14) (2013)
Stefan Canzar, Khaled M. Elbassioni, Julián Mestre
A polynomial-delay algorithm for enumerating approximate solutions to the interval constrained coloring problem. ACM J. Exp. Algorithmics 18 (2013)
Sebastian Böcker, Stefan Canzar, Gunnar W. Klau
The generalized Robinson-Foulds metric. CoRR (2013)
Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau
Charge Group Partitioning in Biomolecular Simulation. J. Comput. Biol. 20 (3) (2013)
Sebastian Böcker, Stefan Canzar, Gunnar W. Klau
The Generalized Robinson-Foulds Metric. WABI (2013)
Stefan Canzar, Tobias Marschall, Sven Rahmann, Chris Schwiegelshohn
Solving the Minimum String Cover Problem. ALENEX (2012)
Stefan Canzar, Mohammed El-Kebir, René Pool, Khaled M. Elbassioni, Alpeshkumar K. Malde, Alan E. Mark, Daan P. Geerke, Leen Stougie, Gunnar W. Klau
Charge Group Partitioning in Biomolecular Simulation. RECOMB (2012)
Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth
CLEVER: clique-enumerating variant finder. Bioinform. 28 (22) (2012)
Stefan Canzar, Sandro Andreotti
A Branch-and-Cut Algorithm for the 2-Species Duplication-Loss Phylogeny Problem CoRR (2012)
Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau
An exact algorithm for side-chain placement in protein design. Optim. Lett. 5 (3) (2011)
Stefan Canzar, Nora C. Toussaint, Gunnar W. Klau
An Exact Algorithm for Side-Chain Placement in Protein Design CoRR (2011)
Stefan Canzar, Khaled M. Elbassioni, Gunnar W. Klau, Julián Mestre
On Tree-Constrained Matchings and Generalizations. ICALP (1) (2011)
Stefan Canzar, Mohammed El-Kebir
A Mathematical Programming Approach to Marker-Assisted Gene Pyramiding. WABI (2011)
Ernst Althaus, Stefan Canzar, Khaled M. Elbassioni, Andreas Karrenbauer, Julián Mestre
Approximation Algorithms for the Interval Constrained Coloring Problem. Algorithmica 61 (2) (2011)
Stefan Canzar, Khaled M. Elbassioni, Amr Elmasry, Rajiv Raman
On the Approximability of the Maximum Interval Constrained Coloring Problem. ISAAC (2) (2010)
Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Jeremiah D. Tipton, Huimin Zhang
Computing H/D-Exchange rates of single residues from data of proteolytic fragments. BMC Bioinform. 11 (2010)
Stefan Canzar, Khaled M. Elbassioni, Julián Mestre
A Polynomial Delay Algorithm for Enumerating Approximate Solutions to the Interval Constrained Coloring Problem. ALENEX (2010)
Ernst Althaus, Stefan Canzar, Carsten Ehrler, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Jeremiah Tiptopn, Huimin Zhang
Discrete Fitting of Hydrogen-Deuterium-Exchange-data of Overlapping Fragments. BIOCOMP (2009)
Ernst Althaus, Stefan Canzar, Khaled M. Elbassioni, Andreas Karrenbauer, Julián Mestre
Approximating the Interval Constrained Coloring Problem. SWAT (2008)
Ernst Althaus, Stefan Canzar, Mark R. Emmett, Andreas Karrenbauer, Alan G. Marshall, Anke Meyer-Bäse, Huimin Zhang
Computing H/D-exchange speeds of single residues from data of peptic fragments. SAC (2008)
Ernst Althaus, Stefan Canzar
A Lagrangian relaxation approach for the multiple sequence alignment problem. J. Comb. Optim. 16 (2) (2008)
Ernst Althaus, Stefan Canzar
LASA: A Tool for Non-heuristic Alignment of Multiple Sequences. BIRD (2008)
Ernst Althaus, Stefan Canzar
A Lagrangian Relaxation Approach for the Multiple Sequence Alignment Problem. COCOA (2007)
Stefan Canzar, Jan Remy
Shape Distributions and Protein Similarity. German Conference on Bioinformatics (2006)

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Publication Activity (10 Years)

Top Topics

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Stefan Canzar