Alexander Schliep

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 16

Top Topics

Recurrent Neural Networks

Wavelet Compression

Top Venues

Publications

Simon Johansson, Ola Engkvist, Morteza Haghir Chehreghani, Alexander Schliep
Diverse Data Expansion with Semi-Supervised k-Determinantal Point Processes. BigData (2023)
Joel Gustafsson, Peter Norberg, Jan R. Qvick-Wester, Alexander Schliep
Fast parallel construction of variable-length Markov chains. BMC Bioinform. 22 (1) (2021)
Shirin Tavara, Alexander Schliep, Debabrota Basu
Federated Learning of Oligonucleotide Drug Molecule Thermodynamics with Differentially Private ADMM-Based SVM. PKDD/ECML Workshops (2) (2021)
Shirin Tavara, Alexander Schliep
Effects of network topology on the performance of consensus and distributed learning of SVMs using ADMM. PeerJ Comput. Sci. 7 (2021)
John Martinsson, Alexander Schliep, Björn Eliasson, Olof Mogren
Blood Glucose Prediction with Variance Estimation Using Recurrent Neural Networks. J. Heal. Informatics Res. 4 (1) (2020)
Laiz Heckmann Barbalho de Figueroa, Rema Salman, Jennifer Horkoff, Soni Chauhan, Marcela Davila, Francisco Gomes de Oliveira Neto, Alexander Schliep
A Modeling Approach for Bioinformatics Workflows. PoEM (2019)
Andreas Ekström, Christian Forssén, Christos Dimitrakakis, Devdatt P. Dubhashi, Håkan T. Johansson, Azam Sheikh Muhammad, Hans Salomonsson, Alexander Schliep
Bayesian optimization in ab initio nuclear physics. CoRR (2019)
John Wiedenhoeft, Alex Cagan, Rimma Kozhemyakina, Rimma Gulevich, Alexander Schliep
Bayesian localization of CNV candidates in WGS data within minutes. Algorithms Mol. Biol. 14 (1) (2019)
John Martinsson, Nasser Mohammadiha, Alexander Schliep
Clustering Vehicle Maneuver Trajectories Using Mixtures of Hidden Markov Models. ITSC (2018)
Shirin Tavara, Alexander Schliep
Effect of Network Topology on the Performance of ADMM-Based SVMs. SBAC-PAD (2018)
Peter Damaschke, Alexander Schliep
An Optimization Problem Related to Bloom Filters with Bit Patterns. SOFSEM (2018)
John Martinsson, Alexander Schliep, Björn Eliasson, Christian Meijner, Simon Persson, Olof Mogren
Automatic Blood Glucose Prediction with Confidence Using Recurrent Neural Networks. KHD@IJCAI (2018)
Edvin Listo Zec, Nasser Mohammadiha, Alexander Schliep
Statistical Sensor Modelling for Autonomous Driving Using Autoregressive Input-Output HMMs. ITSC (2018)
Ivani de Oliveira Negrão Lopes, Alexander Schliep, André Carlos Ponce de Leon Ferreira de Carvalho
Automatic learning of pre-miRNAs from different species. BMC Bioinform. 17 (2016)
John Wiedenhoeft, Eric Brugel, Alexander Schliep
Fast Bayesian Inference of Copy Number Variants Using Hidden Markov Models with Wavelet Compression. RECOMB (2016)
John Wiedenhoeft, Eric Brugel, Alexander Schliep
Fast Bayesian Inference of Copy Number Variants using Hidden Markov Models with Wavelet Compression. PLoS Comput. Biol. 12 (5) (2016)
Rajat Shuvro Roy, Debashish Bhattacharya, Alexander Schliep
-mers with cache-efficient algorithms. Bioinform. 30 (14) (2014)
Md Pavel Mahmud, Alexander Schliep
TreQ-CG: Clustering Accelerates High-Throughput Sequencing Read Mapping. CoRR (2014)
Ivani de Oliveira Negrão Lopes, Alexander Schliep, André Carlos Ponce de Leon Ferreira de Carvalho
The discriminant power of RNA features for pre-miRNA recognition. BMC Bioinform. 15 (2014)
Rajat Shuvro Roy, Debashish Bhattacharya, Alexander Schliep
Turtle: Identifying frequent k-mers with cache-efficient algorithms CoRR (2013)
Rajat Shuvro Roy, Kevin C. Chen, Anirvan M. Sengupta, Alexander Schliep
SLIQ: Simple Linear Inequalities for Efficient Contig Scaffolding. J. Comput. Biol. 19 (10) (2012)
Tobias Marschall, Ivan G. Costa, Stefan Canzar, Markus Bauer, Gunnar W. Klau, Alexander Schliep, Alexander Schönhuth
CLEVER: clique-enumerating variant finder. Bioinform. 28 (22) (2012)
Md Pavel Mahmud, John Wiedenhoeft, Alexander Schliep
-trees. Bioinform. 28 (18) (2012)
Christoph Hafemeister, Ivan G. Costa, Alexander Schönhuth, Alexander Schliep
Classifying short gene expression time-courses with Bayesian estimation of piecewise constant functions. Bioinform. 27 (7) (2011)
Md Pavel Mahmud, Alexander Schliep
Fast MCMC Sampling for Hidden Markov Models to Determine Copy Number Variations. BMC Bioinform. 12 (2011)
Ruben Schilling, Ivan G. Costa, Alexander Schliep
pGQL: A probabilistic graphical query language for gene expression time courses. BioData Min. 4 (2011)
Michael Seifert, Marc Strickert, Alexander Schliep, Ivo Grosse
Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models. Bioinform. 27 (12) (2011)
Md Pavel Mahmud, Alexander Schliep
Speeding Up Bayesian HMM by the Four Russians Method. WABI (2011)
Rajat Shuvro Roy, Kevin C. Chen, Anirvan M. Sengupta, Alexander Schliep
SLIQ: Simple Linear Inequalities for Efficient Contig Scaffolding CoRR (2011)
Christoph Hafemeister, Roland Krause, Alexander Schliep
Selecting Oligonucleotide Probes for Whole-Genome Tiling Arrays with a Cross-Hybridization Potential. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (6) (2011)
Benjamin Georgi, Ivan Gesteira Costa, Alexander Schliep
PyMix - The Python mixture package - a tool for clustering of heterogeneous biological data. BMC Bioinform. 11 (2010)
Ivan G. Costa, Alexander Schönhuth, Christoph Hafemeister, Alexander Schliep
Constrained mixture estimation for analysis and robust classification of clinical time series. Bioinform. 25 (12) (2009)
Marcílio Carlos Pereira de Souto, Ricardo Bastos Cavalcante Prudêncio, Rodrigo G. F. Soares, Daniel S. A. de Araujo, Ivan G. Costa, Teresa Bernarda Ludermir, Alexander Schliep
Ranking and selecting clustering algorithms using a meta-learning approach. IJCNN (2008)
Ivan G. Costa, Stefan Roepcke, Christoph Hafemeister, Alexander Schliep
Inferring differentiation pathways from gene expression. ISMB (2008)
Alexander Schliep, Roland Krause
Efficient Algorithms for the Computational Design of Optimal Tiling Arrays. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (4) (2008)
Marcílio Carlos Pereira de Souto, Ivan G. Costa, Daniel S. A. de Araujo, Teresa Bernarda Ludermir, Alexander Schliep
Clustering cancer gene expression data: a comparative study. BMC Bioinform. 9 (2008)
Anthony J. Macula, Alexander Schliep, Morgan A. Bishop, Thomas E. Renz
New, Improved, and Practical k-Stem Sequence Similarity Measures for Probe Design. J. Comput. Biol. 15 (5) (2008)
Marcílio Carlos Pereira de Souto, Daniel S. A. de Araujo, Ivan G. Costa, Rodrigo G. F. Soares, Teresa Bernarda Ludermir, Alexander Schliep
Comparative study on normalization procedures for cluster analysis of gene expression datasets. IJCNN (2008)
Alexander Schliep, Nicolas Thierry-Mieg, Amin Shokrollahi
08301 Final Report - Group Testing in the Life Sciences. Group Testing in the Life Sciences (2008)
Ivan G. Costa, Marcílio Carlos Pereira de Souto, Alexander Schliep
Validating Gene Clusterings by Selecting Informative Gene Ontology Terms with Mutual Information. BSB (2007)
Alexander Schliep, Roland Krause
Efficient Computational Design of Tiling Arrays Using a Shortest Path Approach. WABI (2007)
Benjamin Georgi, Jörg Schultz, Alexander Schliep
Context-Specific Independence Mixture Modelling for Protein Families. PKDD (2007)
Wasinee Rungsarityotin, Roland Krause, Arno Schödl, Alexander Schliep
Identifying protein complexes directly from high-throughput TAP data with Markov random fields. BMC Bioinform. 8 (2007)
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
Integer linear programming approaches for non-unique probe selection. Discret. Appl. Math. 155 (6-7) (2007)
Alexander Schliep
Detecting functional modules from heterogenous mass data. LWA (2007)
Benjamin Georgi, M. Anne Spence, Pamela Flodman, Alexander Schliep
Mixture Model Based Group Inference in Fused Genotype and Phenotype Data. GfKl (2007)
Ivan G. Costa, Roland Krause, Lennart Opitz, Alexander Schliep
image data. BMC Bioinform. 8 (S-10) (2007)
Benjamin Georgi, Alexander Schliep
Context-specific independence mixture modeling for positional weight matrices. ISMB (Supplement of Bioinformatics) (2006)
Alexander Schliep, Sven Rahmann
Decoding non-unique oligonucleotide hybridization experiments of targets related by a phylogenetic tree. ISMB (Supplement of Bioinformatics) (2006)
Lennart Opitz, Alexander Schliep, Stefan Posch
Joint Analysis of In-situ Hybridization and Gene Expression Data. GfKl (2006)
Alexander Schliep, Ivan G. Costa, Christine Steinhoff, Alexander Schönhuth
Analyzing Gene Expression Time-Courses. IEEE ACM Trans. Comput. Biol. Bioinform. 2 (3) (2005)
Ivan G. Costa, Alexander Schönhuth, Alexander Schliep
The Graphical Query Language: a tool for analysis of gene expression time-courses. Bioinform. 21 (10) (2005)
Ivan G. Costa, Alexander Schliep
On External Indices for Mixtures: Validating Mixtures of Genes. GfKl (2005)
Marcus Weber, Wasinee Rungsarityotin, Alexander Schliep
An Indicator for the Number of Clusters: Using a Linear Map to Simplex Structure. GfKl (2005)
Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert
Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Alexander Schliep, Christine Steinhoff, Alexander Schönhuth
Robust inference of groups in gene expression time-courses using mixtures of HMMs. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Alexander Schliep, Alexander Schönhuth, Christine Steinhoff
Using hidden Markov models to analyze gene expression time course data. ISMB (Supplement of Bioinformatics) (2003)
Alexander Schliep, David C. Torney, Sven Rahmann
Group Testing With DNA Chips: Generating Designs and Decoding Experiments. CSB (2003)
Lars Kaderali, Alexander Schliep
Selecting signature oligonucleotides to identify organisms using DNA arrays. Bioinform. 18 (10) (2002)
P. Pipenbacher, Alexander Schliep, Sebastian Schneckener, Alexander Schönhuth, Dietmar Schomburg, Rainer Schrader
ProClust: improved clustering of protein sequences with an extended graph-based approach. ECCB (2002)
Lars Kaderali, Alexander Schliep
A new Algorithm for Accelerating Pair-Wise Computations of Melting Temperature. Electron. Notes Discret. Math. 8 (2001)
Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader
Clustering protein sequences-structure prediction by transitive homology. Bioinform. 17 (10) (2001)
Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader
Strongly Connected Components can Predict Protein Structure. Electron. Notes Discret. Math. 8 (2001)
Eva Bolten, Alexander Schliep, Sebastian Schneckener, Dietmar Schomburg, Rainer Schrader
Clustering Protein Sequences ? Structure Prediction by Transitive Homology. German Conference on Bioinformatics (1999)
Alexander Schliep
Learning Hidden Markov Model Topology. German Conference on Bioinformatics (1999)
Norman A. Doggett, Jonathan Longmire, Alexander Schliep, David C. Torney
Screening large clone libraries efficiently. German Conference on Bioinformatics (1998)
Emanuel Knill, Alexander Schliep, David C. Torney
Interpretation of Pooling Experiments Using the Markov Chain Monte Carlo Method. J. Comput. Biol. 3 (3) (1996)