Ivo Grosse

Publication Activity (10 Years)

Years Active: 1997-2021
Publications (10 Years): 9

Top Topics

High Throughput Sequencing

Exact Algorithms

Biological Sequences

Top Venues

Publications

Travis J. Lawrence, Fatemeh Hadi-Nezhad, Ivo Grosse, David H. Ardell
tSFM 1.0: tRNA Structure-Function Mapper. Bioinform. 37 (20) (2021)
Ralf Eggeling, Ivo Grosse, Mikko Koivisto
Algorithms for learning parsimonious context trees. Mach. Learn. 108 (6) (2019)
Claus Weinholdt, Henri Wichmann, Johanna Kotrba, David H. Ardell, Matthias Kappler, Alexander W. Eckert, Dirk Vordermark, Ivo Grosse
Prediction of regulatory targets of alternative isoforms of the epidermal growth factor receptor in a glioblastoma cell line. BMC Bioinform. 20 (1) (2019)
Hajk-Georg Drost, Alexander Gabel, Jialin Liu, Marcel Quint, Ivo Grosse
myTAI: evolutionary transcriptomics with R. Bioinform. 34 (9) (2018)
Ivo Hedtke, Ioana M. Lemnian, Ivo Grosse, Matthias Müller-Hannemann
Optimal Block-Based Trimming for Next Generation Sequencing. IEEE ACM Trans. Comput. Biol. Bioinform. 15 (2) (2018)
Martin Nettling, Hendrik Treutler, Jesús Cerquides, Ivo Grosse
Unrealistic phylogenetic trees may improve phylogenetic footprinting. Bioinform. 33 (11) (2017)
Martin Nettling, Hendrik Treutler, Jesús Cerquides, Ivo Grosse
Combining phylogenetic footprinting with motif models incorporating intra-motif dependencies. BMC Bioinform. 18 (1) (2017)
Ralf Eggeling, Ivo Grosse, Jan Grau
InMoDe: tools for learning and visualizing intra-motif dependencies of DNA binding sites. Bioinform. 33 (4) (2017)
Ivo Grosse, Katrin Hoffmann
Bioinformatics challenges of next generation sequencing. it Inf. Technol. 58 (3) (2016)
Pablo Moreno, Stephan Beisken, Bhavana Harsha, Venkatesh Muthukrishnan, Ilinca Tudose, Adriano Dekker, Stefanie Dornfeldt, Franziska Taruttis, Ivo Grosse, Janna Hastings, Steffen Neumann, Christoph Steinbeck
BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology. BMC Bioinform. 16 (2015)
Anja Fischer, Frank Fischer, Gerold Jäger, Jens Keilwagen, Paul Molitor, Ivo Grosse
Computational Recognition of RNA Splice Sites by Exact Algorithms for the Quadratic Traveling Salesman Problem. Comput. 3 (2) (2015)
Ralf Eggeling, Mikko Koivisto, Ivo Grosse
Dealing with small data: On the generalization of context trees. ICML (2015)
Ralf Eggeling, Teemu Roos, Petri Myllymäki, Ivo Grosse
Inferring intra-motif dependencies of DNA binding sites from ChIP-seq data. BMC Bioinform. 16 (2015)
Martin Nettling, Hendrik Treutler, Jan Grau, Jens Keilwagen, Stefan Posch, Ivo Grosse
DiffLogo: a comparative visualization of sequence motifs. BMC Bioinform. 16 (2015)
Jan Grau, Ivo Grosse, Jens Keilwagen
PRROC: computing and visualizing precision-recall and receiver operating characteristic curves in R. Bioinform. 31 (15) (2015)
Jan Grau, Stefan Posch, Ivo Grosse, Jens Keilwagen
A general approach for discriminative de novo motif discovery from high-throughput data. GCB (2014)
Martin Nettling, Nils Thieme, Andreas Both, Ivo Grosse
DRUMS: Disk Repository with Update Management and Select option for high throughput sequencing data. BMC Bioinform. 15 (2014)
Ivo Hedtke, Ioana M. Lemnian, Matthias Müller-Hannemann, Ivo Grosse
On Optimal Read Trimming in Next Generation Sequencing and Its Complexity. AlCoB (2014)
Yvonne Poeschl, Ivo Grosse, Andreas Gogol-Döring
Explaining gene responses by linear modeling. GCB (2014)
Anja Fischer, Frank Fischer, Gerold Jäger, Jens Keilwagen, Paul Molitor, Ivo Grosse
Exact algorithms and heuristics for the Quadratic Traveling Salesman Problem with an application in bioinformatics. Discret. Appl. Math. 166 (2014)
Ralf Eggeling, Teemu Roos, Petri Myllymäki, Ivo Grosse
Robust learning of inhomogeneous PMMs. AISTATS (2014)
Clemens Beckstein, Sebastian Böcker, Martin Bogdan, Helge Bruehlheide, H. Martin Bücker, Joachim Denzler, Peter Dittrich, Ivo Grosse, Alexander Hinneburg, Birgitta König-Ries, Felicitas Löffler, Manja Marz, Matthias Müller-Hannemann, Martin Winter, Wolf Zimmermann
Explorative Analysis of Heterogeneous, Unstructured, and Uncertain Data - A Computer Science Perspective on Biodiversity Research. DATA (2014)
Victor Bellon, Jesús Cerquides, Ivo Grosse
Bayesian Conditional Gaussian Network Classifiers with Applications to Mass Spectra Classification. CoRR (2013)
Ralf Eggeling, André Gohr, Pierre-Yves Bourguignon, Edgar Wingender, Ivo Grosse
Inhomogeneous Parsimonious Markov Models. ECML/PKDD (1) (2013)
Ioana M. Lemnian, Ralf Eggeling, Ivo Grosse
Extended Sunflower Hidden Markov Models for the recognition of homotypic cis-regulatory modules}. GCB (2013)
Jan Grau, Jens Keilwagen, André Gohr, Ivan A. Paponov, Stefan Posch, Michael Seifert, Marc Strickert, Ivo Grosse
Dispom: a Discriminative de-novo Motif Discovery Tool Based on the Jstacs Library. J. Bioinform. Comput. Biol. 11 (1) (2013)
Jan Grau, Jens Keilwagen, André Gohr, Berit Haldemann, Stefan Posch, Ivo Grosse
Jstacs: A Java Framework for Statistical Analysis and Classification of Biological Sequences. J. Mach. Learn. Res. 13 (2012)
Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou
Functional microRNA targets in protein coding sequences. Bioinform. 28 (6) (2012)
Michael Seifert, André Gohr, Marc Strickert, Ivo Grosse
. PLoS Comput. Biol. 8 (1) (2012)
Jens Keilwagen, Jan Grau, Ivan A. Paponov, Stefan Posch, Marc Strickert, Ivo Grosse
De-Novo Discovery of Differentially Abundant Transcription Factor Binding Sites Including Their Positional Preference. PLoS Comput. Biol. 7 (2) (2011)
Michael Seifert, Marc Strickert, Alexander Schliep, Ivo Grosse
Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models. Bioinform. 27 (12) (2011)
Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch
Predicting miRNA targets utilizing an Extended Profile HMM. GCB (2010)
Jens Keilwagen, Jan Grau, Stefan Posch, Marc Strickert, Ivo Grosse
Unifying generative and discriminative learning principles. BMC Bioinform. 11 (2010)
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
Apples and oranges: avoiding different priors in Bayesian DNA sequence analysis. BMC Bioinform. 11 (2010)
Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou
miRGen 2.0: a database of microRNA genomic information and regulation. Nucleic Acids Res. 38 (Database-Issue) (2010)
Michael Seifert, Ali Banaei, Jens Keilwagen, Michael Florian Mette, Andreas Houben, François Roudier, Vincent Colot, Ivo Grosse, Marc Strickert
Array-based Genome Comparison of Arabidopsis Ecotypes using Hidden Markov Models. BIOSIGNALS (2009)
Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse
Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data. Bioinform. 25 (16) (2009)
Michael Seifert, Jens Keilwagen, Marc Strickert, Ivo Grosse
Utilizing Promoter Pair Orientations for HMM-based Analysis of ChIP-chip Data. German Conference on Bioinformatics (2008)
Stefan Posch, Jan Grau, André Gohr, Irad E. Ben-Gal, Alexander E. Kel, Ivo Grosse
Recognition of cis-Regulatory Elements with Vombat. J. Bioinform. Comput. Biol. 5 (2b) (2007)
Christian Kuenne, Ivo Grosse, Inge Matthies, Uwe Scholz, Tatjana Sretenovic-Rajicic, Nils Stein, Andreas Stephanik, Burkhard Steuernagel, Stephan Weise
Using Data Warehouse Technology in Crop Plant Bioinformatics. J. Integr. Bioinform. 4 (1) (2007)
Jens Keilwagen, Jan Grau, Stefan Posch, Ivo Grosse
Recognition of splice sites using maximum conditional likelihood. LWA (2007)
Jan Grau, Jens Keilwagen, Ivo Grosse, Stefan Posch
On the relevance of model orders to discriminative learning of Markov models. LWA (2007)
Jan Grau, Jens Keilwagen, Alexander E. Kel, Ivo Grosse, Stefan Posch
Supervised Posteriors for DNA-motif Classification. German Conference on Bioinformatics (2007)
Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Grosse
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Stephan Weise, Ivo Grosse, Christian Klukas, Dirk Koschützki, Uwe Scholz, Falk Schreiber, Björn H. Junker
Meta-All: a system for managing metabolic pathway information. BMC Bioinform. 7 (2006)
Sven Mielordt, Ivo Grosse, Jürgen Kleffe
Data Structures for Genome Annotation, Alternative Splicing, and Validation. DILS (2006)
Christian Künne, Matthias Lange, T. Funke, H. Miehe, Thomas Thiel, Ivo Grosse, Uwe Scholz
CR-EST: a resource for crop ESTs. Nucleic Acids Res. 33 (Database-Issue) (2005)
Irad E. Ben-Gal, Ayala Shani, André Gohr, Jan Grau, S. Arviv, Armin Shmilovici, Stefan Posch, Ivo Grosse
Identification of transcription factor binding sites with variable-order Bayesian networks. Bioinform. 21 (11) (2005)
Wentian Li, Fengzhu Sun, Ivo Grosse
Extreme Value Distribution Based Gene Selection Criteria for Discriminant Microarray Data Analysis Using Logistic Regression. J. Comput. Biol. 11 (2/3) (2004)
Wentian Li, Ivo Grosse
Comments on "linguistic features in eukaryotic genomes". Complex. 9 (4) (2004)
Wentian Li, Ivo Grosse
Gene selection criterion for discriminant microarray data analysis based on extreme value distributions. RECOMB (2003)
Wentian Li, Pedro Bernaola-Galván, Fatameh Haghighi, Ivo Grosse
Applications of Recursive Segmentation to the Analysis of DNA Sequences. Comput. Chem. 26 (5) (2002)
Patrick Hoffman, Georges G. Grinstein, Kenneth A. Marx, Ivo Grosse, Eugene Stanley
DNA visual and analytic data mining. IEEE Visualization (1997)