Artemis G. Hatzigeorgiou

Publication Activity (10 Years)

Years Active: 1995-2023
Publications (10 Years): 19

Top Topics

Transcription Factors

Service Integration

Experimentally Verified

Top Venues

Nucleic Acids Res.

Publications

Spyros Tastsoglou, Giorgos Skoufos, Marios Miliotis, Dimitra Karagkouni, Ioannis Koutsoukos, Anna Karavangeli, Filippos S. Kardaras, Artemis G. Hatzigeorgiou
DIANA-miRPath v4.0: expanding target-based miRNA functional analysis in cell-type and tissue contexts. Nucleic Acids Res. 51 (W1) (2023)
Spyros Tastsoglou, Athanasios Alexiou, Dimitra Karagkouni, Giorgos Skoufos, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou
DIANA-microT 2023: including predicted targets of virally encoded miRNAs. Nucleic Acids Res. 51 (W1) (2023)
Ioannis Kavakiotis, Athanasios Alexiou, Spyros Tastsoglou, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou
DIANA-miTED: a microRNA tissue expression database. Nucleic Acids Res. 50 (D1) (2022)
Dimitris Grigoriadis, Nikos Perdikopanis, Georgios K. Georgakilas, Artemis G. Hatzigeorgiou
DeepTSS: multi-branch convolutional neural network for transcription start site identification from CAGE data. BMC Bioinform. (2) (2022)
Giorgos Skoufos, Filippos S. Kardaras, Athanasios Alexiou, Ioannis Kavakiotis, Anastasia Lambropoulou, Vasiliki Kotsira, Spyros Tastsoglou, Artemis G. Hatzigeorgiou
Peryton: a manual collection of experimentally supported microbe-disease associations. Nucleic Acids Res. 49 (Database-Issue) (2021)
Nikos Perdikopanis, Georgios Georgakilas, Dimitris Grigoriadis, Vasileios Pierros, Ioannis Kavakiotis, Panagiotis Alexiou, Artemis G. Hatzigeorgiou
DIANA-miRGen v4: indexing promoters and regulators for more than 1500 microRNAs. Nucleic Acids Res. 49 (Database-Issue) (2021)
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49 (Database-Issue) (2021)
Dimitris Grigoriadis, Nikos Perdikopanis, Georgios Georgakilas, Artemis G. Hatzigeorgiou
DiS-TSS: An Annotation Agnostic Algorithm for TSS Identification. IWBBIO (2020)
Dimitra Karagkouni, Maria D. Paraskevopoulou, Spyros Tastsoglou, Giorgos Skoufos, Anna Karavangeli, Vasileios Pierros, Elissavet Zacharopoulou, Artemis G. Hatzigeorgiou
DIANA-LncBase v3: indexing experimentally supported miRNA targets on non-coding transcripts. Nucleic Acids Res. 48 (Database-Issue) (2020)
Dimitra Karagkouni, Maria D. Paraskevopoulou, Serafeim Chatzopoulos, Ioannis S. Vlachos, Spyros Tastsoglou, Ilias Kanellos, Dimitris Papadimitriou, Ioannis Kavakiotis, Sofia Maniou, Giorgos Skoufos, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-TarBase v8: a decade-long collection of experimentally supported miRNA-gene interactions. Nucleic Acids Res. 46 (Database-Issue) (2018)
Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis
ECCB 2018: The 17th European Conference on Computational Biology. Bioinform. 34 (17) (2018)
Ioannis S. Vlachos, Thanasis Vergoulis, Maria D. Paraskevopoulou, Filopoimin Lykokanellos, Georgios Georgakilas, Penny Georgiou, Serafeim Chatzopoulos, Dimitra Karagkouni, Foteini Christodoulou, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-mirExTra v2.0: Uncovering microRNAs and transcription factors with crucial roles in NGS expression data. Nucleic Acids Res. 44 (Webserver-Issue) (2016)
Maria D. Paraskevopoulou, Ioannis S. Vlachos, Dimitra Karagkouni, Georgios Georgakilas, Ilias Kanellos, Thanasis Vergoulis, Konstantinos Zagganas, Panayiotis Tsanakas, Evangelos Floros, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts. Nucleic Acids Res. 44 (Database-Issue) (2016)
Georgios Georgakilas, Ioannis S. Vlachos, Konstantinos Zagganas, Thanasis Vergoulis, Maria D. Paraskevopoulou, Ilias Kanellos, Panayiotis Tsanakas, Dimitris Dellis, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-miRGen v3.0: accurate characterization of microRNA promoters and their regulators. Nucleic Acids Res. 44 (Database-Issue) (2016)
Rodothea-Myrsini Tsoupidi, Ilias Kanellos, Thanasis Vergoulis, Ioannis S. Vlachos, Artemis G. Hatzigeorgiou, Theodore Dalamagas
TarMiner: automatic extraction of miRNA targets from literature. SSDBM (2015)
Thanasis Vergoulis, Ilias Kanellos, Nikos Kostoulas, Georgios Georgakilas, Timos K. Sellis, Artemis G. Hatzigeorgiou, Theodore Dalamagas
mirPub: a database for searching microRNA publications. Bioinform. 31 (9) (2015)
Ioannis S. Vlachos, Konstantinos Zagganas, Maria D. Paraskevopoulou, Georgios Georgakilas, Dimitra Karagkouni, Thanasis Vergoulis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-miRPath v3.0: deciphering microRNA function with experimental support. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Ioannis S. Vlachos, Maria D. Paraskevopoulou, Dimitra Karagkouni, Georgios Georgakilas, Thanasis Vergoulis, Ilias Kanellos, Ioannis-Laertis Anastasopoulos, Sofia Maniou, Konstantina Karathanou, Despina Kalfakakou, Athanasios Fevgas, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-TarBase v7.0: indexing more than half a million experimentally supported miRNA: mRNA interactions. Nucleic Acids Res. 43 (Database-Issue) (2015)
Ilias Kanellos, Vasiliki Vlachokyriakou, Thanasis Vergoulis, Georgios Georgakilas, Yannis Vassiliou, Artemis G. Hatzigeorgiou, Theodore Dalamagas
MirPub v2: Towards Ranking and Refining miRNA Publication Search Results. TPDL (2015)
Katerina Gkirtzou, Thanasis Vergoulis, Artemis G. Hatzigeorgiou, Timos K. Sellis, Theodore Dalamagas
Publishing Diachronic Life Science Linked Data. SWAT4LS (2014)
Ilias Kanellos, Thanasis Vergoulis, Dimitris Sacharidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou, Stelios Sartzetakis, Timos K. Sellis
MR-microT: a MapReduce-based MicroRNA target prediction method. SSDBM (2014)
Maria D. Paraskevopoulou, Georgios Georgakilas, Nikos Kostoulas, Ioannis S. Vlachos, Thanasis Vergoulis, Martin Reczko, Christos Filippidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-microT web server v5.0: service integration into miRNA functional analysis workflows. Nucleic Acids Res. 41 (Webserver-Issue) (2013)
Maria D. Paraskevopoulou, Georgios Georgakilas, Nikos Kostoulas, Martin Reczko, Manolis Maragkakis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-LncBase: experimentally verified and computationally predicted microRNA targets on long non-coding RNAs. Nucleic Acids Res. 41 (Database-Issue) (2013)
Thanasis Vergoulis, Michail Alexakis, Theodore Dalamagas, Manolis Maragkakis, Artemis G. Hatzigeorgiou, Timos K. Sellis
TARCLOUD: A Cloud-Based Platform to Support miRNA Target Prediction. SSDBM (2012)
Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou
Publishing life science data as linked open data: the case study of miRBase. WOD (2012)
Thanasis Vergoulis, Ioannis S. Vlachos, Panagiotis Alexiou, George Georgakilas, Manolis Maragkakis, Martin Reczko, Stefanos Gerangelos, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
TarBase 6.0: capturing the exponential growth of miRNA targets with experimental support. Nucleic Acids Res. 40 (Database-Issue) (2012)
Ioannis S. Vlachos, Nikos Kostoulas, Thanasis Vergoulis, Georgios Georgakilas, Martin Reczko, Manolis Maragkakis, Maria D. Paraskevopoulou, Kostantinos Prionidis, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA miRPath v.2.0: investigating the combinatorial effect of microRNAs in pathways. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Martin Reczko, Manolis Maragkakis, Panagiotis Alexiou, Ivo Grosse, Artemis G. Hatzigeorgiou
Functional microRNA targets in protein coding sequences. Bioinform. 28 (6) (2012)
Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou
Publishing Life Science Data as Linked Open Data: the Case Study of miRBase CoRR (2012)
Manolis Maragkakis, Thanasis Vergoulis, Panagiotis Alexiou, Martin Reczko, Kyriaki Plomaritou, Mixail Gousis, Kornilios Kourtis, Nectarios Koziris, Theodore Dalamagas, Artemis G. Hatzigeorgiou
DIANA-microT Web server upgrade supports Fly and Worm miRNA target prediction and bibliographic miRNA to disease association. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Jan Grau, Daniel Arend, Ivo Grosse, Artemis G. Hatzigeorgiou, Jens Keilwagen, Manolis Maragkakis, Claus Weinholdt, Stefan Posch
Predicting miRNA targets utilizing an Extended Profile HMM. GCB (2010)
Panagiotis Alexiou, Thanasis Vergoulis, Martin Gleditzsch, George Prekas, Theodore Dalamagas, Molly Megraw, Ivo Grosse, Timos K. Sellis, Artemis G. Hatzigeorgiou
miRGen 2.0: a database of microRNA genomic information and regulation. Nucleic Acids Res. 38 (Database-Issue) (2010)
Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou
FreePub: Collecting and Organizing Scientific Material Using Mindmaps CoRR (2010)
Theodore Dalamagas, Tryfon Farmakakis, Manolis Maragkakis, Artemis G. Hatzigeorgiou
FreePub: Collecting and Organizing Scientific Material Using Mindmaps. SWAT4LS (2010)
Manolis Maragkakis, Martin Reczko, Victor A. Simossis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Theodore Dalamagas, Giorgos Giannopoulos, Georgios I. Goumas, Evangelos Koukis, Kornilios Kourtis, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou
DIANA-microT web server: elucidating microRNA functions through target prediction. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Giorgos L. Papadopoulos, Martin Reczko, Victor A. Simossis, Praveen Sethupathy, Artemis G. Hatzigeorgiou
The database of experimentally supported targets: a functional update of TarBase. Nucleic Acids Res. 37 (Database-Issue) (2009)
Giorgos L. Papadopoulos, Panagiotis Alexiou, Manolis Maragkakis, Martin Reczko, Artemis G. Hatzigeorgiou
DIANA-mirPath: Integrating human and mouse microRNAs in pathways. Bioinform. 25 (15) (2009)
Panagiotis Alexiou, Manolis Maragkakis, Giorgos L. Papadopoulos, Martin Reczko, Artemis G. Hatzigeorgiou
Lost in translation: an assessment and perspective for computational microRNA target identification. Bioinform. 25 (23) (2009)
Manolis Maragkakis, Panagiotis Alexiou, Giorgos L. Papadopoulos, Martin Reczko, Theodore Dalamagas, Giorgos Giannopoulos, George I. Goumas, Evangelos Koukis, Kornilios Kourtis, Victor A. Simossis, Praveen Sethupathy, Thanasis Vergoulis, Nectarios Koziris, Timos K. Sellis, Panayotis Tsanakas, Artemis G. Hatzigeorgiou
Accurate microRNA target prediction correlates with protein repression levels. BMC Bioinform. 10 (2009)
Molly Megraw, Praveen Sethupathy, Benoit Corda, Artemis G. Hatzigeorgiou
miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Res. 35 (Database-Issue) (2007)
Axel Bernal, Koby Crammer, Artemis G. Hatzigeorgiou, Fernando Pereira
Global Discriminative Learning for Higher-Accuracy Computational Gene Prediction. PLoS Comput. Biol. 3 (3) (2007)
Karol Szafranski, Molly Megraw, Martin Reczko, Artemis G. Hatzigeorgiou
Support Vector Machines for Predicting microRNA Hairpins. BIOCOMP (2006)
Hanno Hinsch, Artemis G. Hatzigeorgiou
Simple Methods of Finding Short Protein Coding Sequences. BIOCOMP (2006)
Praveen Sethupathy, Molly Megraw, M. Inmaculada Barrasa, Artemis G. Hatzigeorgiou
Computational Identification of Regulatory Factors Involved in MicroRNA Transcription. Panhellenic Conference on Informatics (2005)
Vladimir B. Bajic, Suisheng Tang, Hao Han, Vladimir Brusic, Artemis G. Hatzigeorgiou
Artificial Neural Networks Based Systems for Recognition of Genomic Signals and Regions: A Review. Informatica (Slovenia) 26 (4) (2002)
Martin Reczko, Petko Fiziev, Eike Staub, Artemis G. Hatzigeorgiou
Finding Signal Peptides in Human Protein Sequences Using Recurrent Neural Networks. WABI (2002)
Artemis G. Hatzigeorgiou
Translation initiation start prediction in human cDNAs with high accuracy. Bioinform. 18 (2) (2002)
Artemis G. Hatzigeorgiou, Petko Fiziev, Martin Reczko
DIANA-EST: a statistical analysis. Bioinform. 17 (10) (2001)
Christian Derst, Martin Reczko, Artemis G. Hatzigeorgiou
Prediction of human transnational initiation sites using a multiple neural network approach. Int. J. Comput. Syst. Signals 1 (2) (2000)
Artemis G. Hatzigeorgiou
Translation Initiation Site Prediction in Eucariotic MRNAs with High Accuracy. German Conference on Bioinformatics (2000)
Artemis G. Hatzigeorgiou, Martin Reczko
Feature recognition on expressed sequence tags of human DNA. IJCNN (1999)
Philipp Bucher, James W. Fickett, Artemis G. Hatzigeorgiou
Computational analysis of transcriptional regulatory elements: a field in flux. Comput. Appl. Biosci. 12 (5) (1996)
Niels Mache, Paul Levi, Artemis G. Hatzigeorgiou, Martin Reczko
Detection of Eukaryotic POL II Promoters with Multi-State Time-Delay Neural Networks. German Conference on Bioinformatics (1996)
Martin Reczko, Artemis G. Hatzigeorgiou, Niels Mache, Andreas Zell, Sándor Suhai
A parallel neural network simulator on the connection machine CM-5. Comput. Appl. Biosci. 11 (3) (1995)