Zasha Weinberg

Publication Activity (10 Years)

Years Active: 2000-2021
Publications (10 Years): 2

Top Topics

Sequence Analysis

Hepatitis C Virus

Genomic Sequences

Top Venues

Nucleic Acids Res.

Publications

Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49 (Database-Issue) (2021)
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49 (Database-Issue) (2021)
Jonathan Perreault, Zasha Weinberg, Adam Roth, Olivia Popescu, Pascal Chartrand, Gerardo Ferbeyre, Ronald R. Breaker
Identification of Hammerhead Ribozymes in All Domains of Life Reveals Novel Structural Variations. PLoS Comput. Biol. 7 (5) (2011)
Zasha Weinberg, Ronald R. Breaker
R2R - software to speed the depiction of aesthetic consensus RNA secondary structures. BMC Bioinform. 12 (2011)
Huei-Hun Tseng, Zasha Weinberg, Jeremy Gore, Ronald R. Breaker, Walter L. Ruzzo
Finding Non-Coding RNAs through genome-Scale Clustering. J. Bioinform. Comput. Biol. 7 (2) (2009)
Huei-Hun Tseng, Zasha Weinberg, Jeremy Gore, Ronald R. Breaker, Walter L. Ruzzo
Finding Non-coding RNAs Through Genome-Scale Clustering. APBC (2008)
Zizhen Yao, Jeffrey Barrick, Zasha Weinberg, Shane J. Neph, Ronald R. Breaker, Martin Tompa, Walter L. Ruzzo
-Regulatory Noncoding RNA in Prokaryotes. PLoS Comput. Biol. 3 (7) (2007)
Zasha Weinberg, Walter L. Ruzzo
Sequence-based heuristics for faster annotation of non-coding RNA families. Bioinform. 22 (1) (2006)
Zizhen Yao, Zasha Weinberg, Walter L. Ruzzo
CMfinder - a covariance model based RNA motif finding algorithm. Bioinform. 22 (4) (2006)
Zasha Weinberg, Walter L. Ruzzo
Faster genome annotation of non-coding RNA families without loss of accuracy. RECOMB (2004)
Zasha Weinberg, Walter L. Ruzzo
Exploiting conserved structure for faster annotation of non-coding RNAs without loss of accuracy. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Jason Tsong-Li Wang, Xiong Wang, Dennis E. Shasha, Bruce A. Shapiro, Kaizhong Zhang, Xinhuan Zheng, Qicheng Ma, Zasha Weinberg
An Approximate Search Engine for Structural Databases. SIGMOD Conference (2000)