Daniel Gautheret

Publication Activity (10 Years)

Years Active: 1988-2024
Publications (10 Years): 6

Top Topics

Dimension Reduction

Projection Matrix

Subcellular Localization

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Haoliang Xue, Mélina Gallopin, Camille Marchet, Ha N. Nguyen, Yunfeng Wang, Antoine Lainé, Chloé Bessiere, Daniel Gautheret
-mer count matrix dimension reduction. Bioinform. 40 (3) (2024)
Yunfeng Wang, Haoliang Xue, Christine Pourcel, Yang Du, Daniel Gautheret
2-kupl: mapping-free variant detection from DNA-seq data of matched samples. BMC Bioinform. 22 (1) (2021)
Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49 (Database-Issue) (2021)
Camille Marchet, Zamin Iqbal, Daniel Gautheret, Mikaël Salson, Rayan Chikhi
REINDEER: efficient indexing of k-mer presence and abundance in sequencing datasets. Bioinform. 36 (Supplement-1) (2020)
David Couvin, Aude Bernheim, Claire Toffano-Nioche, Marie Touchon, Juraj Michalik, Bertrand Néron, Eduardo P. C. Rocha, Gilles Vergnaud, Daniel Gautheret, Christine Pourcel
CRISPRCasFinder, an update of CRISRFinder, includes a portable version, enhanced performance and integrates search for Cas proteins. Nucleic Acids Res. 46 (Webserver-Issue) (2018)
Damien Drubay, Daniel Gautheret, Stefan Michiels
A benchmark study of scoring methods for non-coding mutations. Bioinform. 34 (10) (2018)
Jia Li, Marie-Anne Poursat, Damien Drubay, Arnaud Motz, Zohra Saci, Antonin Morillon, Stefan Michiels, Daniel Gautheret
A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events. PLoS Comput. Biol. 11 (11) (2015)
Alban Ott, Anouar Idali, Antonin Marchais, Daniel Gautheret
NAPP: the Nucleic Acid Phylogenetic Profile Database. Nucleic Acids Res. 40 (Database-Issue) (2012)
Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. Adv. Bioinformatics 2012 (2012)
William Ritchie, Samuel Granjeaud, Denis Puthier, Daniel Gautheret
Entropy Measures Quantify Global Splicing Disorders in Cancer. PLoS Comput. Biol. 4 (3) (2008)
William Ritchie, François-Xavier Théodule, Daniel Gautheret
Mireval: a web tool for simple microRNA prediction in genome sequences. Bioinform. 24 (11) (2008)
Matthieu Legendre, William Ritchie, Fabrice Lopez, Daniel Gautheret
Differential Repression of Alternative Transcripts: A Screen for miRNA Targets. PLoS Comput. Biol. 2 (5) (2006)
Vincent Le Texier, Jean-Jack M. Riethoven, Vasudev Kumanduri, Chellappa Gopalakrishnan, Fabrice Lopez, Daniel Gautheret, Thangavel Alphonse Thanaraj
AltTrans: Transcript pattern variants annotated for both alternative splicing and alternative polyadenylation. BMC Bioinform. 7 (2006)
André Lambert, Matthieu Legendre, Jean-Fred Fontaine, Daniel Gautheret
Computing expectation values for RNA motifs using discrete convolutions. BMC Bioinform. 6 (2005)
Matthieu Legendre, André Lambert, Daniel Gautheret
Profile-based detection of microRNA precursors in animal genomes. Bioinform. 21 (7) (2005)
André Lambert, Jean-Fred Fontaine, Matthieu Legendre, Fabrice Leclerc, Emmanuelle Permal, François Major, Harald Putzer, Olivier Delfour, Bernard Michot, Daniel Gautheret
The ERPIN server: an interface to profile-based RNA motif identification. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
A. Laferriere, Daniel Gautheret, Robert Cedergren
An RNA pattern matching program with enhanced performance and portability. Comput. Appl. Biosci. 10 (2) (1994)
Daniel Gautheret, François Major, Robert Cedergren
Pattern searching/alignment with RNA primary and secondary structures: an effective descriptor for tRNA. Comput. Appl. Biosci. 6 (4) (1990)
Robert Cedergren, Daniel Gautheret, Guy Lapalme, François Major
A secondary and tertiary structure editor for nucleic acids. Comput. Appl. Biosci. 4 (1) (1988)