Sam Griffiths-Jones

Publication Activity (10 Years)

Years Active: 2002-2021
Publications (10 Years): 4

Top Topics

Rgb Color Space

Computational Methods

Secondary Structure

Top Venues

Nucleic Acids Res.

Publications

Ioanna Kalvari, Eric P. Nawrocki, Nancy Ontiveros-Palacios, Joanna Argasinska, Kevin Lamkiewicz, Manja Marz, Sam Griffiths-Jones, Claire Toffano-Nioche, Daniel Gautheret, Zasha Weinberg, Elena Rivas, Sean R. Eddy, Robert D. Finn, Alex Bateman, Anton I. Petrov
Rfam 14: expanded coverage of metagenomic, viral and microRNA families. Nucleic Acids Res. 49 (Database-Issue) (2021)
Blake A. Sweeney, Anton I. Petrov, Carlos Eduardo Ribas, Robert D. Finn, Alex Bateman, Maciej Szymanski, Wojciech M. Karlowski, Stefan E. Seemann, Jan Gorodkin, Jamie J. Cannone, Robin Ray Gutell, Simon Kay, Steven J. Marygold, Gilberto dos Santos, Adam Frankish, Jonathan M. Mudge, Ruth Barshir, Simon Fishilevich, Patricia P. Chan, Todd M. Lowe, Ruth L. Seal, Elspeth A. Bruford, Simona Panni, Pablo Porras, Dimitra Karagkouni, Artemis G. Hatzigeorgiou, Lina Ma, Zhang Zhang, Pieter-Jan Volders, Pieter Mestdagh, Sam Griffiths-Jones, Bastian Fromm, Kevin J. Peterson, Ioanna Kalvari, Eric P. Nawrocki, Anton S. Petrov, Shuai Weng, Philia Bouchard-Bourelle, Michelle S. Scott, Lauren M. Lui, David Hoksza, Ruth C. Lovering, Barbara Kramarz, Prita Mani, Sridhar Ramachandran, Zasha Weinberg
RNAcentral 2021: secondary structure integration, improved sequence search and new member databases. Nucleic Acids Res. 49 (Database-Issue) (2021)
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones
miRBase: from microRNA sequences to function. Nucleic Acids Res. 47 (Database-Issue) (2019)
Thomas Bleazard, Janine A. Lamb, Sam Griffiths-Jones
Bias in microRNA functional enrichment analysis. Bioinform. 31 (10) (2015)
Ana Kozomara, Sam Griffiths-Jones
miRBase: annotating high confidence microRNAs using deep sequencing data. Nucleic Acids Res. 42 (Database-Issue) (2014)
Antonio Marco, Sam Griffiths-Jones
Detection of microRNAs in color space. Bioinform. 28 (3) (2012)
Paul P. Gardner, Jennifer Daub, John G. Tate, Benjamin L. Moore, Isabelle H. Osuch, Sam Griffiths-Jones, Robert D. Finn, Eric P. Nawrocki, Diana L. Kolbe, Sean R. Eddy, Alex Bateman
Rfam: Wikipedia, clans and the "decimal" release. Nucleic Acids Res. 39 (Database-Issue) (2011)
Ana Kozomara, Sam Griffiths-Jones
miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res. 39 (Database-Issue) (2011)
Paul P. Gardner, Jennifer Daub, John G. Tate, Eric P. Nawrocki, Diana L. Kolbe, Stinus Lindgreen, Adam C. Wilkinson, Robert D. Finn, Sam Griffiths-Jones, Sean R. Eddy, Alex Bateman
Rfam: updates to the RNA families database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Sam Griffiths-Jones, Harpreet Kaur Saini, Stijn van Dongen, Anton J. Enright
miRBase: tools for microRNA genomics. Nucleic Acids Res. 36 (Database-Issue) (2008)
Sam Griffiths-Jones, Russell J. Grocock, Stijn van Dongen, Alex Bateman, Anton J. Enright
miRBase: microRNA sequences, targets and gene nomenclature. Nucleic Acids Res. 34 (Database-Issue) (2006)
Robert D. Finn, Jaina Mistry, Benjamin Schuster-Böckler, Sam Griffiths-Jones, Volker Hollich, Timo Lassmann, Simon Moxon, Mhairi Marshall, Ajay Khanna, Richard Durbin, Sean R. Eddy, Erik L. L. Sonnhammer, Alex Bateman
Pfam: clans, web tools and services. Nucleic Acids Res. 34 (Database-Issue) (2006)
Sam Griffiths-Jones, Simon Moxon, Mhairi Marshall, Ajay Khanna, Sean R. Eddy, Alex Bateman
Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Res. 33 (Database-Issue) (2005)
Sam Griffiths-Jones
RALEE--RNA ALignment Editor in Emacs. Bioinform. 21 (2) (2005)
Sam Griffiths-Jones
The microRNA Registry. Nucleic Acids Res. 32 (Database-Issue) (2004)
Alex Bateman, Lachlan James M. Coin, Richard Durbin, Robert D. Finn, Volker Hollich, Sam Griffiths-Jones, Ajay Khanna, Mhairi Marshall, Simon Moxon, Erik L. L. Sonnhammer, David J. Studholme, Corin Yeats, Sean R. Eddy
The Pfam protein families database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Sam Griffiths-Jones, Alex Bateman, Mhairi Marshall, Ajay Khanna, Sean R. Eddy
Rfam: an RNA family database. Nucleic Acids Res. 31 (1) (2003)
Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31 (1) (2003)
Alex Bateman, Ewan Birney, Lorenzo Cerutti, Richard Durbin, Laurence Ettwiller, Sean R. Eddy, Sam Griffiths-Jones, Kevin L. Howe, Mhairi Marshall, Erik L. L. Sonnhammer
The Pfam Protein Families Database. Nucleic Acids Res. 30 (1) (2002)
Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings Bioinform. 3 (3) (2002)
Sam Griffiths-Jones, Alex Bateman
The use of structure information to increase alignment accuracy does not aid homologue detection with profile HMMs. Bioinform. 18 (9) (2002)