Rolf Apweiler

ORCID

Publication Activity (10 Years)

Years Active: 1996-2022
Publications (10 Years): 7

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

Publications

Gaia Cantelli, Alex Bateman, Cath Brooksbank, Anton I. Petrov, Rahuman S. Malik-Sheriff, Michele Ide-Smith, Henning Hermjakob, Paul Flicek, Rolf Apweiler, Ewan Birney, Johanna R. McEntyre
The European Bioinformatics Institute (EMBL-EBI) in 2021. Nucleic Acids Res. 50 (D1) (2022)
Peter W. Harrison, Rodrigo Lopez, Nadim Rahman, Stefan Gutnick Allen, Raheela Aslam, Nicola Buso, Carla Cummins, Yasmin Fathy, Eloy Felix, Mihai Glont, Suran Jayathilaka, Sandeep Kadam, Manish Kumar, Katharina b Lauer, Geetika Malhotra, Abayomi Mosaku, Ossama Edbali, Young Mi Park, Andrew Parton, Matt Pearce, Jose Francisco Estrada pena, Joseph Rossetto, Craig Russell, Sandeep Selvakumar, Xènia Pérez Sitjà, Alexey Sokolov, Ross Thorne, Marianna Ventouratou, Peter Walter, Galabina Yordanova, Amonida Zadissa, Guy Cochrane, Niklas Blomberg, Rolf Apweiler
The COVID-19 Data Portal: accelerating SARS-CoV-2 and COVID-19 research through rapid open access data sharing. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Gaia Cantelli, Guy Cochrane, Cath Brooksbank, Ellen M. McDonagh, Paul Flicek, Johanna R. McEntyre, Ewan Birney, Rolf Apweiler
The European Bioinformatics Institute: empowering cooperation in response to a global health crisis. Nucleic Acids Res. 49 (Database-Issue) (2021)
Charles E. Cook, Oana Stroe, Guy Cochrane, Ewan Birney, Rolf Apweiler
The European Bioinformatics Institute in 2020: building a global infrastructure of interconnected data resources for the life sciences. Nucleic Acids Res. 48 (Database-Issue) (2020)
Charles E. Cook, Rodrigo Lopez, Oana Stroe, Guy Cochrane, Cath Brooksbank, Ewan Birney, Rolf Apweiler
The European Bioinformatics Institute in 2018: tools, infrastructure and training. Nucleic Acids Res. 47 (Database-Issue) (2019)
Charles E. Cook, Mary Todd Bergman, Guy Cochrane, Rolf Apweiler, Ewan Birney
The European Bioinformatics Institute in 2017: data coordination and integration. Nucleic Acids Res. 46 (Database-Issue) (2018)
Charles E. Cook, Mary Todd Bergman, Robert D. Finn, Guy Cochrane, Ewan Birney, Rolf Apweiler
The European Bioinformatics Institute in 2016: Data growth and integration. Nucleic Acids Res. 44 (Database-Issue) (2016)
Catherine Brooksbank, Mary Todd Bergman, Rolf Apweiler, Ewan Birney, Janet M. Thornton
The European Bioinformatics Institute's data resources 2014. Nucleic Acids Res. 42 (Database-Issue) (2014)
Prudence Mutowo-Meullenet, Rachael P. Huntley, Emily C. Dimmer, Yasmin Alam-Faruque, Tony Sawford, Maria Jesus Martin, Claire O'Donovan, Rolf Apweiler
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans. Database J. Biol. Databases Curation 2013 (2013)
Sarah Hunter, Philip Jones, Alex L. Mitchell, Rolf Apweiler, Teresa K. Attwood, Alex Bateman, Thomas Bernard, David Binns, Peer Bork, Sarah W. Burge, Edouard De Castro, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Matthew Fraser, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Meullenet, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn, Catherine Rivoire, Amaia Sangrador-Vegas, Jeremy D. Selengut, Christian J. A. Sigrist, Maxim Scheremetjew, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas, Cathy H. Wu, Corin Yeats, Siew-Yit Yong
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40 (Database-Issue) (2012)
Emily C. Dimmer, Rachael P. Huntley, Yasmin Alam-Faruque, Tony Sawford, Claire O'Donovan, Maria Jesus Martin, Benoit Bely, Paul Browne, Wei Mun Chan, Ruth Y. Eberhardt, Michael Gardner, Kati Laiho, Duncan Legge, Michele Magrane, Klemens Pichler, Diego Poggioli, Harminder Sehra, Andrea H. Auchincloss, Kristian B. Axelsen, Marie-Claude Blatter, Emmanuel Boutet, Silvia Braconi-Quintaje, Lionel Breuza, Alan Bridge, Elisabeth Coudert, Anne Estreicher, Maria Livia Famiglietti, Serenella Ferro-Rojas, Marc Feuermann, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Patrick Masson, Madelaine Moinat, Ivo Pedruzzi, Sylvain Poux, Catherine Rivoire, Bernd Roechert, Michel Schneider, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Lydie Bougueleret, Ghislaine Argoud-Puy, Isabelle Cusin, Paula Duek-Roggli, Ioannis Xenarios, Rolf Apweiler
The UniProt-GO Annotation database in 2011. Nucleic Acids Res. 40 (Database-Issue) (2012)
Alex Alves Freitas, Daniela Wieser, Rolf Apweiler
On the Importance of Comprehensible Classification Models for Protein Function Prediction. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (1) (2010)
Nell Sedransk, Lawrence H. Cox, Deborah Nolan, Keith Soper, Clifford H. Spiegelman, Linda J. Young, Katrina L. Kelner, Robert A. Moffitt, Ani Thakar, M. Jordan Raddick, Edward J. Ungvarsky, Richard W. Carlson, Rolf Apweiler
Make Research Data Public?---Not Always so Simple: A Dialogue for Statisticians and Science Editors CoRR (2010)
David Binns, Emily Dimmer, Rachael P. Huntley, Daniel Barrell, Claire O'Donovan, Rolf Apweiler
QuickGO: a web-based tool for Gene Ontology searching. Bioinform. 25 (22) (2009)
Rachael P. Huntley, David Binns, Emily Dimmer, Daniel Barrell, Claire O'Donovan, Rolf Apweiler
QuickGO: a user tutorial for the web-based Gene Ontology browser. Database J. Biol. Databases Curation 2009 (2009)
Sarah Hunter, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic, David Lonsdale, Rodrigo Lopez, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Nicola J. Mulder, Darren A. Natale, Christine A. Orengo, Antony F. Quinn, Jeremy D. Selengut, Christian J. A. Sigrist, Manjula Thimma, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
InterPro: the integrative protein signature database. Nucleic Acids Res. 37 (Database-Issue) (2009)
Daniel Barrell, Emily Dimmer, Rachael P. Huntley, David Binns, Claire O'Donovan, Rolf Apweiler
The GOA database in 2009 - an integrated Gene Ontology Annotation resource. Nucleic Acids Res. 37 (Database-Issue) (2009)
Kai Ye, Marcel H. Schulz, Quan Long, Rolf Apweiler, Zemin Ning
Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinform. 25 (21) (2009)
Guy Cochrane, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, James K. Bonfield, Lawrence Bower, Paul Browne, Matias Castro, Tony Cox, Fehmi Demiralp, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Mikyung Jang, Tamara Kulikova, Alberto Labarga, Rasko Leinonen, Steven Leonard, Quan Lin, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Sheila Plaister, Stephen Robinson, Siamak Sobhany, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler, Tim J. P. Hubbard, Ewan Birney
Priorities for nucleotide trace, sequence and annotation data capture at the Ensembl Trace Archive and the EMBL Nucleotide Sequence Database. Nucleic Acids Res. 36 (Database-Issue) (2008)
Samuel Patient, Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin, Rolf Apweiler
UniProtJAPI: a remote API for accessing UniProt data. Bioinform. 24 (10) (2008)
Richard G. Côté, Philip Jones, Lennart Martens, Rolf Apweiler, Henning Hermjakob
The Ontology Lookup Service: more data and better tools for controlled vocabulary queries. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Sebastian Klie, Lennart Martens, Juan Antonio Vizcaíno, Richard G. Côté, Philip Jones, Rolf Apweiler, Alexander Hinneburg, Henning Hermjakob
An Application of Latent Topic Document Analysis to Large-Scale Proteomics Databases. German Conference on Bioinformatics (2007)
Samuel Kerrien, Yasmin Alam-Faruque, Bruno Aranda, I. Bancarz, Alan Bridge, C. Derow, Emily Dimmer, Marc Feuermann, A. Friedrichsen, Rachael P. Huntley, C. Kohler, Jyoti Khadake, C. Leroy, A. Liban, C. Lieftink, Luisa Montecchi-Palazzi, Sandra E. Orchard, Judith E. Risse, Karine Robbe, Bernd Roechert, David Thorneycroft, Y. Zhang, Rolf Apweiler, Henning Hermjakob
IntAct - open source resource for molecular interaction data. Nucleic Acids Res. 35 (Database-Issue) (2007)
Sebastian Klie, Alexander Hinneburg, Lennart Martens, Juan Antonio Vizcaíno, Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
Analysing latent topics in large-scale proteomics. LWA (2007)
Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Peer Bork, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise C. Daugherty, Mark Dibley, Robert D. Finn, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter, Daniel Kahn, Alexander Kanapin, Anish Kejariwal, Alberto Labarga, Petra S. Langendijk-Genevaux, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Christine A. Orengo, Robert Petryszak, Jeremy D. Selengut, Christian J. A. Sigrist, Paul D. Thomas, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats
New developments in the InterPro database. Nucleic Acids Res. 35 (Database-Issue) (2007)
Richard G. Côté, Philip Jones, Lennart Martens, Samuel Kerrien, Florian Reisinger, Quan Lin, Rasko Leinonen, Rolf Apweiler, Henning Hermjakob
The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases. BMC Bioinform. 8 (2007)
Tamara Kulikova, Ruth Akhtar, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Lawrence Bower, Paul Browne, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, Gemma Hoad, Carola Kanz, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Dariusz Lorenc, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Sheila Plaister, Siamak Sobhany, Peter Stoehr, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
EMBL Nucleotide Sequence Database in 2006. Nucleic Acids Res. 35 (Database-Issue) (2007)
Richard G. Côté, Philip Jones, Rolf Apweiler, Henning Hermjakob
The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries. BMC Bioinform. 7 (2006)
Cathy H. Wu, Rolf Apweiler, Amos Bairoch, Darren A. Natale, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Raja Mazumder, Claire O'Donovan, Nicole Redaschi, Baris E. Suzek
The Universal Protein Resource (UniProt): an expanding universe of protein information. Nucleic Acids Res. 34 (Database-Issue) (2006)
Guy Cochrane, Philippe Aldebert, Nicola Althorpe, Mikael Andersson, Wendy Baker, Alastair Baldwin, Kirsty Bates, Sumit Bhattacharyya, Paul Browne, Alexandra van den Broek, Matias Castro, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, John Gamble, Carola Kanz, Tamara Kulikova, Charles Lee, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Michelle McHale, Hamish McWilliam, Gaurab Mukherjee, Francesco Nardone, Maria Pilar Garcia Pastor, Siamak Sobhany, Peter Stoehr, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
EMBL Nucleotide Sequence Database: developments in 2005. Nucleic Acids Res. 34 (Database-Issue) (2006)
Rasko Leinonen, Francesco Nardone, Weimin Zhu, Rolf Apweiler
UniSave: the UniProtKB Sequence/Annotation Version database. Bioinform. 22 (10) (2006)
Philip Jones, Richard G. Côté, Lennart Martens, Antony F. Quinn, Chris F. Taylor, William Derache, Henning Hermjakob, Rolf Apweiler
PRIDE: a public repository of protein and peptide identifications for the proteomics community. Nucleic Acids Res. 34 (Database-Issue) (2006)
Nicola J. Mulder, Rolf Apweiler, Teresa K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Paul Bradley, Peer Bork, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, David Lonsdale, Rodrigo Lopez, Ivica Letunic, Martin Madera, John Maslen, Jennifer McDowall, Alex L. Mitchell, Anastasia N. Nikolskaya, Sandra E. Orchard, Marco Pagni, Chris P. Ponting, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist, Ville Silventoinen, David J. Studholme, Robert Vaughan, Cathy H. Wu
InterPro, progress and status in 2005. Nucleic Acids Res. 33 (Database-Issue) (2005)
Robert Petryszak, Ernst Kretschmann, Daniela Wieser, Rolf Apweiler
The predictive power of the CluSTr database. Bioinform. 21 (18) (2005)
Samir S. Velankar, P. McNeil, Virginie Mittard-Runte, A. Suarez, Daniel Barrell, Rolf Apweiler, Kim Henrick
E-MSD: an integrated data resource for bioinformatics. Nucleic Acids Res. 33 (Database-Issue) (2005)
Christian Blaschke, Alexander S. Yeh, Evelyn Camon, Marc E. Colosimo, Rolf Apweiler, Lynette Hirschman, Alfonso Valencia
Do you do text? Bioinform. 21 (23) (2005)
Paul J. Kersey, Lawrence Bower, Lorna Morris, Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud, Isabelle Phan, Alexandre Gattiker, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter McLaren, Britt Reimholz, Laurent Duret, Simon Penel, Ingmar Reuter, Rolf Apweiler
Integr8 and Genome Reviews: integrated views of complete genomes and proteomes. Nucleic Acids Res. 33 (Database-Issue) (2005)
Carola Kanz, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Alastair Baldwin, Kirsty Bates, Paul Browne, Alexandra van den Broek, Matias Castro, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, John Gamble, Federico Garcia Diez, Nicola Harte, Tamara Kulikova, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Siamak Sobhany, Peter Stoehr, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 33 (Database-Issue) (2005)
Amos Bairoch, Rolf Apweiler, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
The Universal Protein Resource (UniProt). Nucleic Acids Res. 33 (Database-Issue) (2005)
Sandra E. Orchard, Luisa Montecchi-Palazzi, Henning Hermjakob, Rolf Apweiler
The Use of Common Ontologies and Controlled Vocabularies to Enable Data Exchange and Deposition for Complex Proteomic Experiments. Pacific Symposium on Biocomputing (2005)
Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian Lee, Michele Magrane, John Maslen, David Binns, Rolf Apweiler
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA. BMC Bioinform. 6 (S-1) (2005)
Emmanuel Quevillon, Ville Silventoinen, Sharmila Pillai, Nicola Harte, Nicola J. Mulder, Rolf Apweiler, Rodrigo Lopez
InterProScan: protein domains identifier. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Philip Jones, Nisha Vinod, Thomas A. Down, Andre Hackmann, Andreas Kähäri, Ernst Kretschmann, Antony F. Quinn, Daniela Wieser, Henning Hermjakob, Rolf Apweiler
Dasty and UniProt DAS: a perfect pair for protein feature visualization. Bioinform. 21 (14) (2005)
Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler
IntAct: an open source molecular interaction database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Rolf Apweiler, Amos Bairoch, Cathy H. Wu, Winona C. Barker, Brigitte Boeckmann, Serenella Ferro, Elisabeth Gasteiger, Hongzhan Huang, Rodrigo Lopez, Michele Magrane, Maria Jesus Martin, Darren A. Natale, Claire O'Donovan, Nicole Redaschi, Lai-Su L. Yeh
UniProt: the Universal Protein knowledgebase. Nucleic Acids Res. 32 (Database-Issue) (2004)
Daniela Wieser, Ernst Kretschmann, Rolf Apweiler
Filtering erroneous protein annotation. ISMB/ECCB (Supplement of Bioinformatics) (2004)
Manuela Pruess, Paul J. Kersey, Rolf Apweiler
The Integr8 project - a resource for genomic and proteomic data. Silico Biol. 5 (2) (2004)
Manuela Pruess, Paul J. Kersey, Rolf Apweiler
Integrating Genomic and Proteomic Data: The Integr8 Project. J. Integr. Bioinform. 1 (1) (2004)
Fernando Martín-Sánchez, Ilias Iakovidis, S. Nørager, Victor Maojo, Piet C. de Groen, Johan van der Lei, T. Jones, Klaus Abraham-Fuchs, Rolf Apweiler, Ankica Babic
Synergy between medical informatics and bioinformatics: facilitating genomic medicine for future health care. J. Biomed. Informatics 37 (1) (2004)
Rasko Leinonen, Federico Garcia Diez, David Binns, Wolfgang Fleischmann, Rodrigo Lopez, Rolf Apweiler
UniProt archive. Bioinform. 20 (17) (2004)
Tamara Kulikova, Philippe Aldebert, Nicola Althorpe, Wendy Baker, Kirsty Bates, Paul Browne, Alexandra van den Broek, Guy Cochrane, Karyn Duggan, Ruth Y. Eberhardt, Nadeem Faruque, Maria Garcia-Pastor, Nicola Harte, Carola Kanz, Rasko Leinonen, Quan Lin, Vincent Lombard, Rodrigo Lopez, Renato Mancuso, Michelle McHale, Francesco Nardone, Ville Silventoinen, Peter Stoehr, Guenter Stoesser, Mary Ann Tuli, Katerina Tzouvara, Robert Vaughan, Dan Wu, Weimin Zhu, Rolf Apweiler
The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Vivian Lee, Evelyn Camon, Emily Dimmer, Daniel Barrell, Rolf Apweiler
GOA? - Use of Gene Ontology Annotation (GOA) for biological interpretation of '-omics' data and for validation of automatic annotation tools. Silico Biol. 5 (1) (2004)
Evelyn Camon, Michele Magrane, Daniel Barrell, Vivian Lee, Emily Dimmer, John Maslen, David Binns, Nicola Harte, Rodrigo Lopez, Rolf Apweiler
The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology. Nucleic Acids Res. 32 (Database-Issue) (2004)
Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Wolfgang Fleischmann, Sinéad Boyce, Kristian B. Axelsen, Amos Bairoch, Dietmar Schomburg, Keith F. Tipton, Rolf Apweiler
IntEnz, the integrated relational enzyme database. Nucleic Acids Res. 32 (Database-Issue) (2004)
Brigitte Boeckmann, Amos Bairoch, Rolf Apweiler, Marie-Claude Blatter, Anne Estreicher, Elisabeth Gasteiger, Maria Jesus Martin, Karine Michoud, Claire O'Donovan, Isabelle Phan, Sandrine Pilbout, Michel Schneider
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res. 31 (1) (2003)
Evgenia V. Kriventseva, Florence Servant, Rolf Apweiler
Improvements to CluSTr: the database of SWISS-PROT+TrEMBL protein clusters. Nucleic Acids Res. 31 (1) (2003)
Catherine Brooksbank, Evelyn Camon, Midori A. Harris, Michele Magrane, Maria Jesus Martin, Nicola J. Mulder, Claire O'Donovan, Helen E. Parkinson, Mary Ann Tuli, Rolf Apweiler, Ewan Birney, Alvis Brazma, Kim Henrick, Rodrigo Lopez, Guenter Stoesser, Peter Stoehr, Graham Cameron
The European Bioinformatics Institute's data resources. Nucleic Acids Res. 31 (1) (2003)
Evelyn Camon, Daniel Barrell, Vivian Lee, Emily Dimmer, Rolf Apweiler
The Gene Ontology Annotation (GOA) Database - An integrated resource of GO annotations to the UniProt Knowledgebase. Silico Biol. 4 (1) (2003)
Manuela Pruess, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler
The Proteome Analysis database: a tool for the in silico analysis of whole proteomes. Nucleic Acids Res. 31 (1) (2003)
Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Daniel Barrell, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Sam Griffiths-Jones, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, David Lonsdale, Ville Silventoinen, Sandra E. Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Jeremy D. Selengut, Florence Servant, Christian J. A. Sigrist, Robert Vaughan, Evgeni M. Zdobnov
The InterPro Database, 2003 brings increased coverage and new features. Nucleic Acids Res. 31 (1) (2003)
Margaret Biswas, Joseph F. O'Rourke, Evelyn Camon, Gillian Fraser, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Florence Servant, Rolf Apweiler
Applications of InterPro in Protein Annotation and Genome Analysis. Briefings Bioinform. 3 (3) (2002)
Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Evgenia V. Kriventseva, Nicola J. Mulder
Automation of Protein Sequence Characterization and Its Application in Whole Proteome Analysis. Gene Regulations and Metabolism (2002)
Nicola J. Mulder, Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, David Binns, Margaret Biswas, Paul Bradley, Peer Bork, Philipp Bucher, Richard R. Copley, Emmanuel Courcelle, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Sam Griffiths-Jones, Daniel H. Haft, Henning Hermjakob, Nicolas Hulo, Daniel Kahn, Alexander Kanapin, Maria Krestyaninova, Rodrigo Lopez, Ivica Letunic, Sue Orchard, Marco Pagni, David Peyruc, Chris P. Ponting, Florence Servant, Christian J. A. Sigrist
InterPro: An Integrated Documentation Resource for Protein Families, Domains and Functional Sites Briefings Bioinform. 3 (3) (2002)
Claire O'Donovan, Maria Jesus Martin, Alexandre Gattiker, Elisabeth Gasteiger, Amos Bairoch, Rolf Apweiler
High-quality Protein Knowledge Resource: SWISS-PROT and TrEMBL. Briefings Bioinform. 3 (3) (2002)
Michele Magrane, Rolf Apweiler
Organisation and standardisation of information in SWISS_PROT and TrEMBL. Data Sci. J. 1 (1) (2002)
Steffen Möller, Michael D. R. Croning, Rolf Apweiler
Erratum: Evaluation of methods for the prediction of membrane spanning regions. Bioinform. 18 (1) (2002)
Steffen Möller, Michael Schroeder, Rolf Apweiler
Consistent Integration of Non-reliable Heterogeneous Information Resources Applied to the Annotation of Transmembrane Proteins. Comput. Chem. 26 (1) (2002)
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
The EBI SRS server-recent developments. Bioinform. 18 (2) (2002)
Alexander Kanapin, Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Florence Servant, Evgeni M. Zdobnov
Interactive InterPro-based comparisons of proteins in whole genomes. Bioinform. 18 (2) (2002)
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
The EBI SRS server-new features. Bioinform. 18 (8) (2002)
Rolf Apweiler, Margaret Biswas, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Isabelle Phan, Evgeni M. Zdobnov
Proteome Analysis Database: online application of InterPro and CluSTr for the functional classification of proteins in whole genomes. Nucleic Acids Res. 29 (1) (2001)
Evgenia V. Kriventseva, Wolfgang Fleischmann, Evgeni M. Zdobnov, Rolf Apweiler
CluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins. Nucleic Acids Res. 29 (1) (2001)
Ernst Kretschmann, Wolfgang Fleischmann, Rolf Apweiler
Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT. Bioinform. 17 (10) (2001)
Rolf Apweiler
Functional Information in SWISS-PROT: the Basis for Large-scale Characterisation of Protein Sequences. Briefings Bioinform. 2 (1) (2001)
Rolf Apweiler, Paul J. Kersey, Vivien Junker, Amos Bairoch
Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al. Bioinform. 17 (6) (2001)
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29 (1) (2001)
Kai J. Runte, Henning Hermjakob, Rolf Apweiler
Towards a New Curation Environment for the TrEMBL Database. German Conference on Bioinformatics (2001)
Evgeni M. Zdobnov, Rolf Apweiler
InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinform. 17 (9) (2001)
Ernst Kretschmann, Rolf Apweiler
Automatic rule generation for protein annotation with the C4.5 data-mining algorithm applied on peptides in Ensembl. German Conference on Bioinformatics (2001)
Astrid Fleischmann, Michael Darsow, Kirill Degtyarenko, Rolf Apweiler
IntEnz - The Enzyme Database in Oracle. German Conference on Bioinformatics (2001)
Steffen Möller, Michael D. R. Croning, Rolf Apweiler
Evaluation of methods for the prediction of membrane spanning regions. Bioinform. 17 (7) (2001)
Amos Bairoch, Rolf Apweiler
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res. 28 (1) (2000)
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16 (12) (2000)
Kerstin M. L. Menne, Henning Hermjakob, Rolf Apweiler
A comparison of signal sequence prediction methods using a test set of signal peptides. Bioinform. 16 (8) (2000)
Evgeni M. Zdobnov, Rodrigo Lopez, Rolf Apweiler, Thure Etzold
The EBI SRS Server: Recent Developments. German Conference on Bioinformatics (2000)
Steffen Möller, Evgenia V. Kriventseva, Rolf Apweiler
A collection of well characterised integral membrane proteins. Bioinform. 16 (12) (2000)
Paul J. Kersey, Henning Hermjakob, Rolf Apweiler
VARSPLIC: alternatively-spliced protein sequences derived from SWISS-PROT and TrEMBL. Bioinform. 16 (11) (2000)
Margaret Biswas, Rolf Apweiler, Wolfgang Fleischmann, Alexander Kanapin, Youla Karavidopoulou, Paul J. Kersey, Evgenia V. Kriventseva, Virginie Mittard, Nicola J. Mulder, Thomas M. Oinn, Isabelle Phan, Evgeni M. Zdobnov
Proteome Analysis: Application of InterPro and CluSTr for the Functional Classification of Proteins in Whole Genomes. German Conference on Bioinformatics (2000)
Henning Hermjakob, Wolfgang Fleischmann, Rolf Apweiler
Swissknife - 'lazy parsing' of SWISS-PROT entries. Bioinform. 15 (9) (1999)
Arno Velds, Henning Hermjakob, Rolf Apweiler
Feature Propagation - Semi Automatic transfer of position dependent SWISS-PROT annotation. German Conference on Bioinformatics (1999)
Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler
Removing redundancy in SWISS-PROT and TrEMBL. Bioinform. 15 (3) (1999)
Wolfgang Fleischmann, Steffen Möller, Alain Gateau, Rolf Apweiler
A novel method for automatic functional annotation of proteins. Bioinform. 15 (3) (1999)
V. L. Junker, Rolf Apweiler, Amos Bairoch
Representation of functional information in the SWISS-PROT Data Bank. Bioinform. 15 (12) (1999)
Steffen Möller, Michael J. Wise, David P. Kreil, Michael Schroeder, D. Gilbest, Rolf Apweiler
Facilitating context-sensitive queries: A tool to rephrase SWISS-PROT. German Conference on Bioinformatics (1999)
Amos Bairoch, Rolf Apweiler
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999. Nucleic Acids Res. 27 (1) (1999)
Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation. Bioinform. 15 (3) (1999)
Steffen Möller, Ulf Leser, Wolfgang Fleischmann, Rolf Apweiler
EDITtoTrEMBL: A distributed approach to high-quality automated protein sequence annotation. German Conference on Bioinformatics (1998)
Henning Hermjakob, Claire O'Donovan, Maria Jesus Martin, Fiona Lang, Rolf Apweiler
SPTR: A comprehensive, non redundant and up-to-date view of the protein sequence world. German Conference on Bioinformatics (1998)
Wolfgang Fleischmann, Steffen Möller, Alain Gateau, Rolf Apweiler
A novel method for automatic and reliable functional annotation of proteins. German Conference on Bioinformatics (1998)
Claire O'Donovan, Maria Jesus Martin, Eric Glémet, Jean-Jacques Codani, Rolf Apweiler
Removing Redundancy in SWISS-PROT and TrEMBL. German Conference on Bioinformatics (1998)

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Rolf Apweiler