Inge Jonassen

Publication Activity (10 Years)

Years Active: 1991-2021
Publications (10 Years): 10

Top Topics

Comparative Analysis

Linkage Disequilibrium

Ensemble Feature Selection

Top Venues

Publications

Ksenia Lavrichenko, Øyvind Helgeland, Pål R. Njølstad, Inge Jonassen, Stefan Johansson
SeeCiTe: a method to assess CNV calls from SNP arrays using trio data. Bioinform. 37 (13) (2021)
Xiaokang Zhang, Inge Jonassen
RASflow: an RNA-Seq analysis workflow with Snakemake. BMC Bioinform. 21 (1) (2020)
Yaxin Xue, Anders Lanzén, Inge Jonassen
Reconstructing ribosomal genes from large scale total RNA meta-transcriptomic data. Bioinform. 36 (11) (2020)
Xiaokang Zhang, Inge Jonassen
An Ensemble Feature Selection Framework Integrating Stability. BIBM (2019)
Xiaokang Zhang, Inge Jonassen
A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-treated Atlantic Cod (Gadus morhua) Liver. CoRR (2019)
Xiaokang Zhang, Inge Jonassen
A Comparative Analysis of Feature Selection Methods for Biomarker Discovery in Study of Toxicant-Treated Atlantic Cod (Gadus Morhua) Liver. NAIS (2019)
Xiaokang Zhang, Inge Jonassen
EFSIS: Ensemble Feature Selection Integrating Stability. CoRR (2018)
Konstantina Dimitrakopoulou, Elisabeth Wik, Lars A. Akslen, Inge Jonassen
Deblender: a semi-/unsupervised multi-operational computational method for complete deconvolution of expression data from heterogeneous samples. BMC Bioinform. 19 (1) (2018)
Kidane M. Tekle, Sveinung Gundersen, Kjetil Klepper, Lars Ailo Bongo, Inge Alexander Raknes, Xiaxi Li, Wei Zhang, Christian Andreetta, Teshome Dagne Mulugeta, Matús Kalas, Morten B. Rye, Erik Hjerde, Jeevan Karloss Antony Samy, Ghislain Fornous, Abdulrahman Azab, Dag Inge Våge, Eivind Hovig, Nils Peder Willassen, Finn Drabløs, Ståle Nygård, Kjell Petersen, Inge Jonassen
Norwegian e-Infrastructure for Life Sciences (NeLS). F1000Research 7 (2018)
Tomasz Stokowy, Mateusz Garbulowski, Torunn Fiskerstrand, Rita Holdhus, Kornel Labun, Pawel Sztromwasser, Christian Gilissen, Alexander Hoischen, Gunnar Houge, Kjell Petersen, Inge Jonassen, Vidar M. Steen
RareVariantVis: new tool for visualization of causative variants in rare monogenic disorders using whole genome sequencing data. Bioinform. 32 (19) (2016)
Susanne Balzer, Ketil Malde, Markus A. Grohme, Inge Jonassen
Filtering duplicate reads from 454 pyrosequencing data. Bioinform. 29 (7) (2013)
Jon C. Ison, Matús Kalas, Inge Jonassen, Dan M. Bolser, Mahmut Uludag, Hamish McWilliam, James Malone, Rodrigo Lopez, Steve Pettifer, Peter M. Rice
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinform. 29 (10) (2013)
Susanne Balzer, Ketil Malde, Inge Jonassen
Systematic exploration of error sources in pyrosequencing flowgram data. Bioinform. 27 (13) (2011)
Siv Midtun Hollup, Michael I. Sadowski, Inge Jonassen, William R. Taylor
Exploring the limits of fold discrimination by structural alignment: A large scale benchmark using decoys of known fold. Comput. Biol. Chem. 35 (3) (2011)
Susanne Balzer, Ketil Malde, Anders Lanzén, Animesh Sharma, Inge Jonassen
Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim. Bioinform. 27 (15) (2011)
Susanne Balzer, Ketil Malde, Anders Lanzén, Animesh Sharma, Inge Jonassen
Characteristics of 454 pyrosequencing data - enabling realistic simulation with flowsim. Bioinform. 26 (18) (2010)
Matús Kalas, Pål Puntervoll, Alexandre Joseph, Edita Bartaseviciute, Armin Töpfer, Prabakar Venkataraman, Steve Pettifer, Jan Christian Bryne, Jon C. Ison, Christophe Blanchet, Kristoffer Rapacki, Inge Jonassen
BioXSD: the common data-exchange format for everyday bioinformatics web services. Bioinform. 26 (18) (2010)
Steve Pettifer, Jon C. Ison, Matús Kalas, Dave Thorne, Philip McDermott, Inge Jonassen, Ali Liaquat, José María Fernández, Jose Manuel Rodriguez, David G. Pisano, Christophe Blanchet, Mahmut Uludag, Peter M. Rice, Edita Bartaseviciute, Kristoffer Rapacki, Maarten L. Hekkelman, Olivier Sand, Heinz Stockinger, Andrew B. Clegg, Erik Bongcam-Rudloff, Jean Salzemann, Vincent Breton, Teresa K. Attwood, Graham Cameron, Gert Vriend
The EMBRACE web service collection. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron
The BREW workshop series: a stimulating experience in PhD education. Briefings Bioinform. 9 (3) (2008)
Lars Skjaerven, Inge Jonassen, Nathalie Reuter
TMM@: a web application for the analysis of transmembrane helix mobility. BMC Bioinform. 8 (2007)
Ketil Malde, Korbinian Schneeberger, Eivind Coward, Inge Jonassen
RBR: library-less repeat detection for ESTs. Bioinform. 22 (18) (2006)
Inge Jonassen, Daniel Klose, William R. Taylor
Protein model refinement using structural fragment tessellation. Comput. Biol. Chem. 30 (5) (2006)
Junhyong Kim, Inge Jonassen
Guest Editorial: WABI Special Section Part II. IEEE ACM Trans. Comput. Biol. Bioinform. 2 (1) (2005)
Ketil Malde, Eivind Coward, Inge Jonassen
A graph based algorithm for generating EST consensus sequences. Bioinform. 21 (8) (2005)
Kristian Flikka, Fekadu Yadetie, Astrid Lægreid, Inge Jonassen
XHM: A system for detection of potential cross hybridizations in DNA microarrays. BMC Bioinform. 5 (2004)
Junhyong Kim, Inge Jonassen
Guest Editorial: WABI Special Section Part 1. IEEE ACM Trans. Comput. Biol. Bioinform. 1 (4) (2004)
Junbai Wang, Trond Hellem Bø, Inge Jonassen, Ola Myklebost, Eivind Hovig
Tumor classification and marker gene prediction by feature selection and fuzzy c-means clustering using microarray data. BMC Bioinform. 4 (2003)
Ketil Malde, Eivind Coward, Inge Jonassen
Fast Sequence Clustering Using A Suffix Array Algorithm. Bioinform. 19 (10) (2003)
Trond Hellem Bø, Inge Jonassen, Ingvar Eidhammer, Carsten Helgesen
A fast top-down method for constructing reliable radiation hybrid frameworks. Bioinform. 18 (1) (2002)
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, William R. Taylor
Structure motif discovery and mining the PDB. Bioinform. 18 (2) (2002)
Darrell Conklin, Inge Jonassen, Rein Aasland, William R. Taylor
Association of nucleotide patterns with gene function classes: application to human 3' untranslated sequences. Bioinform. 18 (1) (2002)
Ingvar Eidhammer, Inge Jonassen, Svenn Helge Grindhaug, David R. Gilbert, Madu Ratnayake
A Constraint Based Structure Description Language for Biosequences. Constraints An Int. J. 6 (2/3) (2001)
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
The InterPro database, an integrated documentation resource for protein families, domains and functional sites. Nucleic Acids Res. 29 (1) (2001)
B. Dysvik, Inge Jonassen
J-Express: exploring gene expression data using Java. Bioinform. 17 (4) (2001)
Inge Jonassen, Ingvar Eidhammer, Darrell Conklin, William R. Taylor
Structure Motif Discovery and Mining the PDB. German Conference on Bioinformatics (2000)
Rolf Apweiler, Terri K. Attwood, Amos Bairoch, Alex Bateman, Ewan Birney, Margaret Biswas, Philipp Bucher, Lorenzo Cerutti, Florence Corpet, Michael D. R. Croning, Richard Durbin, Laurent Falquet, Wolfgang Fleischmann, Jérôme Gouzy, Henning Hermjakob, Nicolas Hulo, Inge Jonassen, Daniel Kahn, Alexander Kanapin, Youla Karavidopoulou, Rodrigo Lopez, Beate Marx, Nicola J. Mulder, Thomas M. Oinn, Marco Pagni, Florence Servant, Christian J. A. Sigrist, Evgeni M. Zdobnov
InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinform. 16 (12) (2000)
Ingvar Eidhammer, Inge Jonassen, William R. Taylor
Structure Comparison and Structure Patterns. J. Comput. Biol. 7 (5) (2000)
Jaak Vilo, Alvis Brazma, Inge Jonassen, Alan J. Robinson, Esko Ukkonen
Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data. ISMB (2000)
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
Pattern Discovery in Biosequences. ICGI (1998)
Alvis Brazma, Inge Jonassen, Jaak Vilo, Esko Ukkonen
Predicting gene regulatory elements from their expression data in the complete yeast genome. German Conference on Bioinformatics (1998)
Alvis Brazma, Inge Jonassen, Ingvar Eidhammer, David R. Gilbert
Approaches to the Automatic Discovery of Patterns in Biosequences. J. Comput. Biol. 5 (2) (1998)
Inge Jonassen
Efficient discovery of conserved patterns using a pattern graph. Comput. Appl. Biosci. 13 (5) (1997)
Alvis Brazma, Inge Jonassen, Esko Ukkonen, Jaak Vilo
Discovering Patterns and Subfamilies in Biosequences. ISMB (1996)
Rune Espelid, Inge Jonassen
A comparison of splitting methods for the identification of corner-points. Pattern Recognit. Lett. 12 (2) (1991)