Robert Giegerich

Publication Activity (10 Years)

Years Active: 1977-2017
Publications (10 Years): 5

Top Venues

Bioinform.

BMC Bioinform.

Algorithms

CMSR@ECCB

Technical University Munich, Germany (PHD)

Education History

Technical University Munich, Germany

PHD

Publications

Benedikt Löwes, Cédric Chauve, Yann Ponty, Robert Giegerich
The BRaliBase dent - a tale of benchmark design and interpretation. Briefings Bioinform. 18 (2) (2017)
Thomas Gatter, Robert Giegerich, Cédric Saule
Integrating Pareto Optimization into Dynamic Programming. Algorithms 9 (1) (2016)
Stefan Janssen, Robert Giegerich
Ambivalent covariance models. BMC Bioinform. 16 (2015)
Stefan Janssen, Robert Giegerich
The RNA shapes studio. Bioinform. 31 (3) (2015)
Cédric Saule, Robert Giegerich
Pareto optimization in algebraic dynamic programming. Algorithms Mol. Biol. 10 (2015)
Robert Giegerich, Hélène Touzet
Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms 7 (1) (2014)
Cédric Saule, Robert Giegerich
Observations on the Feasibility of Exact Pareto Optimization. CMSR@ECCB (2014)
Georg Sauthoff, Robert Giegerich
Yield grammar analysis and product optimization in a domain-specific language for dynamic programming. Sci. Comput. Program. 87 (2014)
Georg Sauthoff, Mathias Möhl, Stefan Janssen, Robert Giegerich
Bellman's GAP - a language and compiler for dynamic programming in sequence analysis. Bioinform. 29 (5) (2013)
Benedikt Löwes, Robert Giegerich
Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment. GCB (2013)
Stefanie Schirmer, Robert Giegerich
Forest alignment with affine gaps and anchors, applied in RNA structure comparison. Theor. Comput. Sci. 483 (2013)
Mohamed El-Kalioby, Mohamed Abouelhoda, Jan Krüger, Robert Giegerich, Alexander Sczyrba, Dennis P. Wall, Peter J. Tonellato
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package. BMC Bioinform. 13 (S-17) (2012)
Burkhard Linke, Robert Giegerich, Alexander Goesmann
Conveyor: a workflow engine for bioinformatic analyses. Bioinform. 27 (7) (2011)
Stefanie Schirmer, Robert Giegerich
Forest Alignment with Affine Gaps and Anchors. CPM (2011)
Robert Giegerich, Georg Sauthoff
Yield grammar analysis in the Bellman's GAP compiler. LDTA (2011)
Georg Sauthoff, Stefan Janssen, Robert Giegerich
Bellman's GAP: a declarative language for dynamic programming. PPDP (2011)
Stefan Janssen, Christian Schudoma, Gerhard Steger, Robert Giegerich
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction. BMC Bioinform. 12 (2011)
Robert Giegerich, Christian Höner zu Siederdissen
Semantics and Ambiguity of Stochastic RNA Family Models. IEEE ACM Trans. Comput. Biol. Bioinform. 8 (2) (2011)
Claus Brabrand, Robert Giegerich, Anders Møller
Analyzing ambiguity of context-free grammars. Sci. Comput. Program. 75 (3) (2010)
Andreas Bremges, Stefanie Schirmer, Robert Giegerich
Fine-tuning structural RNA alignments in the twilight zone. BMC Bioinform. 11 (2010)
Stefan Janssen, Robert Giegerich
Faster computation of exact RNA shape probabilities. Bioinform. 26 (5) (2010)
Corinna Theis, Stefan Janssen, Robert Giegerich
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs. WABI (2010)
Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz
Significant speedup of database searches with HMMs by search space reduction with PSSM family models. Bioinform. 25 (24) (2009)
Peter Steffen, Robert Giegerich, Mathieu Giraud
GPU Parallelization of Algebraic Dynamic Programming. PPAM (2) (2009)
Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert
Alignment of Minisatellite Maps Based on Run-Length Encoding Scheme. J. Bioinform. Comput. Biol. 7 (2) (2009)
Robert Homann, David Fleer, Robert Giegerich, Marc Rehmsmeier
: enhanced suffix array construction tool. Bioinform. 25 (8) (2009)
Julia Herold, Stefan Kurtz, Robert Giegerich
Efficient computation of absent words in genomic sequences. BMC Bioinform. 9 (2008)
Alexander Sczyrba, Susanne Konermann, Robert Giegerich
Two interactive Bioinformatics courses at the Bielefeld University Bioinformatics Server. Briefings Bioinform. 9 (3) (2008)
Mohamed Ibrahim Abouelhoda, Robert Giegerich, Behshad Behzadi, Jean-Marc Steyaert
Alignment of Minisatellite Maps: A Minimum Spanning Tree-based Approach. APBC (2008)
Stefan Janssen, Jens Reeder, Robert Giegerich
Shape based indexing for faster search of RNA family databases. BMC Bioinform. 9 (2008)
Anna-Lena Lamprecht, Tiziana Margaria, Bernhard Steffen, Alexander Sczyrba, Sven Hartmeier, Robert Giegerich
GeneFisher-P: variations of GeneFisher as processes in Bio-jETI. BMC Bioinform. 9 (S-4) (2008)
Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron
The BREW workshop series: a stimulating experience in PhD education. Briefings Bioinform. 9 (3) (2008)
Janina Reeder, Jens Reeder, Robert Giegerich
Locomotif: from graphical motif description to RNA motif search. ISMB/ECCB (Supplement of Bioinformatics) (2007)
Jens Reeder, Peter Steffen, Robert Giegerich
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Claus Brabrand, Robert Giegerich, Anders Møller
Analyzing Ambiguity of Context-Free Grammars. CIAA (2007)
Janina Reeder, Robert Giegerich
A graphical programming system for molecular motif search. GPCE (2006)
Ketil Malde, Robert Giegerich
Calculating PSSM probabilities with lazy dynamic programming. J. Funct. Program. 16 (1) (2006)
Peter Steffen, Björn Voß, Marc Rehmsmeier, Jens Reeder, Robert Giegerich
RNAshapes: an integrated RNA analysis package based on abstract shapes. Bioinform. 22 (4) (2006)
Robert Giegerich, Peter Steffen
Challenges in the compilation of a domain specific language for dynamic programming. SAC (2006)
Wolfgang Gerlach, Robert Giegerich
GUUGle: a utility for fast exact matching under RNA complementary rules including G-U base pairing. Bioinform. 22 (6) (2006)
Michael Beckstette, Robert Homann, Robert Giegerich, Stefan Kurtz
Fast index based algorithms and software for matching position specific scoring matrices. BMC Bioinform. 7 (2006)
Peter Steffen, Robert Giegerich
Table design in dynamic programming. Inf. Comput. 204 (9) (2006)
Philipp N. Seibel, Jan Krüger, Sven Hartmeier, Knut Schwarzer, Kai Löwenthal, Henning Mersch, Thomas Dandekar, Robert Giegerich
XML schemas for common bioinformatic data types and their application in workflow systems. BMC Bioinform. 7 (2006)
Peter Steffen, Robert Giegerich
Correction: versatile and declarative dynamic programming using pair algebras. BMC Bioinform. 7 (2006)
Jens Reeder, Robert Giegerich
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. Bioinform. 21 (17) (2005)
Peter Steffen, Robert Giegerich
Versatile and declarative dynamic programming using pair algebras. BMC Bioinform. 6 (2005)
Janina Reeder, Peter Steffen, Robert Giegerich
Effective ambiguity checking in biosequence analysis. BMC Bioinform. 6 (2005)
Robert Giegerich, Carsten Meyer, Peter Steffen
A discipline of dynamic programming over sequence data. Sci. Comput. Program. 51 (3) (2004)
Björn Voss, Carsten Meyer, Robert Giegerich
Evaluating the predictability of conformational switching in RNA. Bioinform. 20 (10) (2004)
Paul P. Gardner, Robert Giegerich
A comprehensive comparison of comparative RNA structure prediction approaches. BMC Bioinform. 5 (2004)
Jens Reeder, Robert Giegerich
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics. BMC Bioinform. 5 (2004)
Matthias Höchsmann, Björn Voss, Robert Giegerich
Pure Multiple RNA Secondary Structure Alignments: A Progressive Profile Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 1 (1) (2004)
Michael Beckstette, Dirk Strothmann, Robert Homann, Robert Giegerich, Stefan Kurtz
: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays. German Conference on Bioinformatics (2004)
Jan Krüger, Alexander Sczyrba, Stefan Kurtz, Robert Giegerich
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Michael Beckstette, Jens T. Mailänder, Richard J. Marhöfer, Alexander Sczyrba, Enno Ohlebusch, Robert Giegerich, Paul M. Selzer
Genlight: Interactive high-throughput sequence analysis and comparative genomics. J. Integr. Bioinform. 1 (1) (2004)
Jomuna V. Choudhuri, Chris Schleiermacher, Stefan Kurtz, Robert Giegerich
GenAlyzer: interactive visualization of sequence similarities between entire genomes. Bioinform. 20 (12) (2004)
Alexander Sczyrba, Jan Krüger, Henning Mersch, Stefan Kurtz, Robert Giegerich
RNA-related tools on the Bielefeld Bioinformatics Server. Nucleic Acids Res. 31 (13) (2003)
Robert Giegerich, Stefan Kurtz, Jens Stoye
Efficient implementation of lazy suffix trees. Softw. Pract. Exp. 33 (11) (2003)
Matthias Höchsmann, Thomas Töller, Robert Giegerich, Stefan Kurtz
Local Similarity in RNA Secondary Structures. CSB (2003)
Björn Voß, Robert Giegerich
Prediction of conformational switching in RNA. German Conference on Bioinformatics (2003)
Robert Giegerich
Towards A Discipline of Dynamic Programming. GI Jahrestagung (2002)
Robert Giegerich, Carsten Meyer
Algebraic Dynamic Programming. AMAST (2002)
Robert Giegerich, Peter Steffen
Implementing Algebraic Dynamic Programming in the Functional and the Imperative Programming Paradigm. MPC (2002)
Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich
PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinform. 18 (1) (2002)
Georg Fuellen, Johann-Wolfgang Wägele, Robert Giegerich
Minimum conflict: a divide-and-conquer approach to phylogeny estimation. Bioinform. 17 (12) (2001)
Dirk Evers, Robert Giegerich
Reducing the Conformation Space in RNA Structure Prediction. German Conference on Bioinformatics (2001)
Robert Giegerich
Explaining and Controlling Ambiguity in Dynamic Programming. CPM (2000)
Robert Giegerich
A systematic approach to dynamic programming in bioinformatics. Bioinform. 16 (8) (2000)
Stefan Kurtz, Enno Ohlebusch, Chris Schleiermacher, Jens Stoye, Robert Giegerich
Computation and Visualization of Degenerate Repeats in Complete Genomes. ISMB (2000)
Dirk Evers, Robert Giegerich
RNA movies: visualizing RNA secondary structure spaces. Bioinform. 15 (1) (1999)
Robert Giegerich, Stefan Kurtz, Jens Stoye
Efficient Implementation of Lazy Suffix Trees. WAE (1999)
Robert Giegerich, Dirk Haase, Marc Rehmsmeier
Prediction and Visualization of Structural Switches in RNA. Pacific Symposium on Biocomputing (1999)
Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing
Semantic Matching for Left-Linear Convergent Rewrite Systems J. Funct. Log. Program. 1999 (11) (1999)
Robert Giegerich, Dieter Lorenz
ViSeL - An interactive course in DNA Sequencing. Workshop Multimedia-Systeme, GI Jahrestagung (1998)
Henning Hermjakob, Robert Giegerich, Walter Arnold
RIFLE: Rapid Identification of Microorganisms by Fragment Length Evaluation. ISMB (1997)
Dirk Evers, Robert Giegerich
RNA Movies: Visualizing RNA secondary structure spaces. German Conference on Bioinformatics (1997)
Robert Giegerich, Stefan Kurtz
From Ukkonen to McCreight and Weiner: A Unifying View of Linear-Time Suffix Tree Construction. Algorithmica 19 (3) (1997)
Robert Giegerich, Christian Büschking
Sequence Analysis with Distributed Resources: A WWW-Based Course. German Conference on Bioinformatics (1996)
Christian Büschking, Robert Giegerich
Sequenzanalyse mit verteilten Ressourcen: Ein WWW-basierter Kurs. Informationstechnik Tech. Inform. 38 (5) (1996)
Robert Giegerich, Folker Meyer, Chris Schleiermacher
GeneFisher-Software Support for the Detection of Postulated Genes. ISMB (1996)
Bernd Bütow, Robert Giegerich, Enno Ohlebusch, Stephan Thesing
A New Strategy for Semantic Matching PLILP (1995)
Robert Giegerich, Stefan Kurtz
A Comparison of Imperative and Purely Functional Suffix Tree Constructions. Sci. Comput. Program. 25 (2-3) (1995)
Robert Giegerich, Stefan Kurtz
Suffix Trees in the Functional Programming Paradigm. ESOP (1994)
Robert Giegerich
Considerate Code Selection. Code Generation (1991)
Robert Giegerich, Willi Schepper
Der Studiengang Naturwissenschaftliche Informatik an der Universität Bielefeld. Physik und Informatik (1991)
Robert Giegerich, Enno Ohlebusch
An Implicit Representation of Infinite Sequences of Terms. Bull. EATCS 43 (1991)
Robert Giegerich
On the Structure of Verifiable Code Generator Specifications. PLDI (1990)
Robert Giegerich
Code Selection by Inversion of Order-Sorted Derivors. Theor. Comput. Sci. 73 (2) (1990)
Robert Giegerich
Composition and Evaluation of Attribute Coupled Grammars. Acta Informatica 25 (4) (1988)
Robert Giegerich, Karl Schmal
Code Selection Techniques: Pattern Matching, Tree Parsing, and Inversion of Derivors. ESOP (1988)
Harald Ganzinger, Robert Giegerich
A note on termination in combinatiosn of heterogeneous term rewriting systems. Bull. EATCS 31 (1987)
Robert Giegerich
Logic specification of code generation techniques. Programs as Data Objects (1985)
Harald Ganzinger, Robert Giegerich
Attribute coupled grammars. SIGPLAN Symposium on Compiler Construction (1984)
Robert Giegerich
A Formal Framework for the Derivation of Machine-Specific Optimizers. ACM Trans. Program. Lang. Syst. 5 (3) (1983)
Robert Giegerich
A Formal Model of Instruction Set Semantics. Fachtagung über Programmiersprachen (1982)
Robert Giegerich
Automatic Generation of Machine Specific Code Optimizers. POPL (1982)
Harald Ganzinger, Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm
A Truly Generative Semantics-Directed Compiler Generator. SIGPLAN Symposium on Compiler Construction (1982)
Robert Giegerich, Ulrich Möncke, Reinhard Wilhelm
Invariance of Approximate Semantics with Respect to Program Transformations. GI Jahrestagung (1981)
Robert Giegerich, Reinhard Wilhelm
Counter-One-Pass Features in One-Pass Compilation: A Formalization Using Attribute Grammars. Inf. Process. Lett. 7 (6) (1978)
Robert Giegerich, Reinhard Wilhelm
Implementierbarkeit attributierter Grammatiken. GI Jahrestagung (1977)

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Publication Activity (10 Years)

Top Topics

Top Venues

Robert Giegerich