pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows.

Jens Reeder Peter Steffen Robert Giegerich

Published in: Nucleic Acids Res. (2007)

Keyphrases

sliding window
data streams
rna secondary structure prediction
fixed size
rna structures
variable size
window size
space efficient
streaming data
limited memory
window sizes
continuous queries
walsh hadamard transform
protein folding
structural motifs
data structure
communication systems
multiresolution