Hélène Touzet

Publication Activity (10 Years)

Years Active: 1996-2020
Publications (10 Years): 7

Top Topics

Comparative Analysis

Error Correction

Hadamard Transform

Genomic Sequences

Top Venues

J. Comput. Biol.

Publications

Leandro Lima, Camille Marchet, Ségolène Caboche, Corinne Da Silva, Benjamin Istace, Jean-Marc Aury, Hélène Touzet, Rayan Chikhi
Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data. Briefings Bioinform. 21 (4) (2020)
Pierre Pericard, Yoann Dufresne, Loïc Couderc, Samuel Blanquart, Hélène Touzet
MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes. Bioinform. 34 (4) (2018)
Chadi Saad, Laurent Noé, Hugues Richard, Julie Leclerc, Marie-Pierre Buisine, Hélène Touzet, Martin Figeac
DiNAMO: highly sensitive DNA motif discovery in high-throughput sequencing data. BMC Bioinform. 19 (1) (2018)
Juraj Michalik, Hélène Touzet, Yann Ponty
Efficient approximations of RNA kinetics landscape using non-redundant sampling. Bioinform. 33 (14) (2017)
Christophe Vroland, Mikaël Salson, Sébastien Bini, Hélène Touzet
0 lossless seeds. J. Discrete Algorithms 37 (2016)
Hélène Touzet
On the Levenshtein Automaton and the Size of the Neighbourhood of a Word. LATA (2016)
Azadeh Saffarian, Mathieu Giraud, Hélène Touzet
Modeling Alternate RNA Structures in Genomic Sequences. J. Comput. Biol. 22 (3) (2015)
Robert Giegerich, Hélène Touzet
Modeling Dynamic Programming Problems over Sequences and Trees with Inverse Coupled Rewrite Systems. Algorithms 7 (1) (2014)
Christophe Vroland, Mikaël Salson, Hélène Touzet
Lossless Seeds for Searching Short Patterns with High Error Rates. IWOCA (2014)
Azadeh Saffarian, Mathieu Giraud, Hélène Touzet
Searching for alternate RNA structures in genomic sequences. CMSR@ECCB (2014)
Azadeh Saffarian, Mathieu Giraud, Antoine de Monte, Hélène Touzet
RNA Locally Optimal Secondary Structures. J. Comput. Biol. 19 (10) (2012)
Julien Allali, Cédric Saule, Cédric Chauve, Yves D'Aubenton-Carafa, Alain Denise, Christine Drevet, Pascal Ferraro, Daniel Gautheret, Claire Herrbach, Fabrice Leclerc, Antoine de Monte, Aïda Ouangraoua, Marie-France Sagot, Michel Termier, Claude Thermes, Hélène Touzet
BRASERO: A Resource for Benchmarking RNA Secondary Structure Comparison Algorithms. Adv. Bioinformatics 2012 (2012)
Evguenia Kopylova, Laurent Noé, Hélène Touzet
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data. Bioinform. 28 (24) (2012)
Laurie Tonon, Hélène Touzet, Jean-Stéphane Varré
-regulatory regions in genomes. Nucleic Acids Res. 38 (Web-Server-Issue) (2010)
Guillaume Blin, Alain Denise, Serge Dulucq, Claire Herrbach, Hélène Touzet
Alignments of RNA Structures. IEEE ACM Trans. Comput. Biol. Bioinform. 7 (2) (2010)
Arnaud Fontaine, Hélène Touzet
Computational identification of protein-coding sequences by comparative analysis. Int. J. Data Min. Bioinform. 3 (2) (2009)
Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré
Self-overlapping Occurrences and Knuth-Morris-Pratt Algorithm for Weighted Matching. LATA (2009)
Arnaud Fontaine, Antoine de Monte, Hélène Touzet
MAGNOLIA: multiple alignment of protein-coding and structural RNA sequences. Nucleic Acids Res. 36 (Web-Server-Issue) (2008)
Hélène Touzet
Comparing similar ordered trees in linear-time. J. Discrete Algorithms 5 (4) (2007)
Hélène Touzet, Jean-Stéphane Varré
Efficient and accurate P-value computation for Position Weight Matrices. Algorithms Mol. Biol. 2 (2007)
Arnaud Fontaine, Hélène Touzet
Computational Identification of Protein-Coding Sequences by Comparative Analysis. BIBM (2007)
Matthieu Defrance, Hélène Touzet
Predicting transcription factor binding sites using local over-representation and comparative genomics. BMC Bioinform. 7 (2006)
Guillaume Blin, Hélène Touzet
How to Compare Arc-Annotated Sequences: The Alignment Hierarchy. SPIRE (2006)
Aude Liefooghe, Hélène Touzet, Jean-Stéphane Varré
Large Scale Matching for Position Weight Matrices. CPM (2006)
Hélène Touzet
A Linear Tree Edit Distance Algorithm for Similar Ordered Trees. CPM (2005)
Serge Dulucq, Hélène Touzet
Decomposition algorithms for the tree edit distance problem. J. Discrete Algorithms 3 (2-4) (2005)
Hélène Touzet, Olivier Perriquet
CARNAC: folding families of related RNAs. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Serge Dulucq, Hélène Touzet
Analysis of Tree Edit Distance Algorithms. CPM (2003)
Olivier Perriquet, Hélène Touzet, Max Dauchet
Finding the common structure shared by two homologous RNAs. Bioinform. 19 (1) (2003)
Hélène Touzet
Tree edit distance with gaps. Inf. Process. Lett. 85 (3) (2003)
Hélène Touzet
A Characterisation of Multiply Recursive Functions with Higman's Lemma. Inf. Comput. 178 (2) (2002)
Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet
Algorithms with polynomial interpretation termination proof. J. Funct. Program. 11 (1) (2001)
Hélène Touzet
A Characterisation of Multiply Recursive Functions with Higman's Lemma. RTA (1999)
Guillaume Bonfante, Adam Cichon, Jean-Yves Marion, Hélène Touzet
Complexity Classes and Rewrite Systems with Polynomial Interpretation. CSL (1998)
Hélène Touzet
A Complex Example of a Simplifying Rewrite System. ICALP (1998)
Hélène Touzet
Encoding the Hydra Battle as a Rewrite System. MFCS (1998)
E. A. Cichon, Hélène Touzet
An Ordinal Calculus for Proving Termination in Term Rewriting. CAAP (1996)