MATAM: reconstruction of phylogenetic marker genes from short sequencing reads in metagenomes.
Pierre PericardYoann DufresneLoïc CoudercSamuel BlanquartHélène TouzetPublished in: Bioinform. (2018)
Keyphrases
- high throughput sequencing
- reference genome
- rna seq
- evolutionary history
- horizontal gene transfer
- gene expression
- genome sequences
- genomic sequences
- sequenced genomes
- high throughput
- three dimensional
- computational approaches
- genome wide
- gene expression data
- high resolution
- discrete tomography
- microarray data
- genome scale
- image reconstruction
- biological processes
- gene ontology
- microarray data analysis
- reconstruction method
- regulatory networks
- experimental conditions
- microarray gene expression data
- high precision
- maximum parsimony