Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
Jens ReederRobert GiegerichPublished in: BMC Bioinform. (2004)
Keyphrases
- detection algorithm
- dynamic programming
- times faster
- case study
- learning algorithm
- k means
- parallel implementation
- search space
- preprocessing
- objective function
- significant improvement
- cost function
- optimal solution
- matching algorithm
- neural network
- recognition algorithm
- worst case
- improved algorithm
- hardware implementation
- probabilistic model
- mobile robot
- experimental evaluation
- hardware architecture
- np hard
- convergence rate
- rna secondary structure prediction
- classification algorithm
- tree structure
- energy function
- design process
- clustering method
- optimization algorithm
- theoretical analysis
- linear programming
- image registration
- motion estimation
- user interface
- image sequences
- clustering algorithm