Folker Meyer

Publication Activity (10 Years)

Years Active: 1996-2022
Publications (10 Years): 15

Top Topics

Parameter Tuning

Remote Attestation

Top Venues

Briefings Bioinform.

Publications

Hendrik F. R. Schmidt, Jörg Schlötterer, Marcel Bargull, Enrico Nasca, Ryan Aydelott, Christin Seifert, Folker Meyer
Towards a trustworthy, secure and reliable enclave for machine learning in a hospital setting: The Essen Medical Computing Platform (EMCP). CoRR (2022)
Hendrik F. R. Schmidt, Jörg Schlötterer, Marcel Bargull, Enrico Nasca, Ryan Aydelott, Christin Seifert, Folker Meyer
Towards a trustworthy, secure and reliable enclave for machine learning in a hospital setting: The Essen Medical Computing Platform (EMCP). CogMI (2021)
Somali Chaterji, Jinkyu Koo, Ninghui Li, Folker Meyer, Ananth Grama, Saurabh Bagchi
Federation in genomics pipelines: techniques and challenges. Briefings Bioinform. 20 (1) (2019)
Tobias Paczian, William L. Trimble, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
The MG-RAST API explorer: an on-ramp for RESTful query composition. BMC Bioinform. 20 (1) (2019)
Ashraf Mahgoub, Paul Wood, Alexander Medoff, Subrata Mitra, Folker Meyer, Somali Chaterji, Saurabh Bagchi
SOPHIA: Online Reconfiguration of Clustered NoSQL Databases for Time-Varying Workloads. USENIX Annual Technical Conference (2019)
Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. Briefings Bioinform. 20 (4) (2019)
Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke
On the way to research objects for environmental genomics (or metagenomics). RO (2018)
Ashraf Mahgoub, Sachandhan Ganesh, Folker Meyer, Ananth Grama, Somali Chaterji
Suitability of NoSQL systems - Cassandra and ScyllaDB - For IoT workloads. COMSNETS (2017)
Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, Somali Chaterji
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads. Middleware (2017)
Caitlin Ross, Misbah Mubarak, John Jenkins, Philip H. Carns, Christopher D. Carothers, Robert B. Ross, Wei Tang, Wolfgang Gerlach, Folker Meyer
A Case Study in Using Discrete-Event Simulation to Improve the Scalability of MG-RAST. SIGSIM-PADS (2016)
Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer
The MG-RAST metagenomics database and portal in 2015. Nucleic Acids Res. 44 (Database-Issue) (2016)
Kanak Mahadik, Wei Tang, Saurabh Bagchi, Folker Meyer
Do specialized distributed frameworks for bioinformatics applications obtain better performance over generic ones? BCB (2015)
Andreas Wilke, Wolfgang Gerlach, Travis Harrison, Tobias Paczian, Wei Tang, William L. Trimble, Jared Wilkening, Narayan Desai, Folker Meyer
Shock: Active Storage for Multicloud Streaming Data Analysis. BDC (2015)
Andreas Wilke, Jared Bischof, Travis Harrison, Tom Brettin, Mark D'Souza, Wolfgang Gerlach, Hunter Matthews, Tobias Paczian, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer
A RESTful API for Accessing Microbial Community Data for MG-RAST. PLoS Comput. Biol. 11 (1) (2015)
Wolfgang Gerlach, Wei Tang, Andreas Wilke, Dan Olson, Folker Meyer
Container Orchestration for Scientific Workflows. IC2E (2015)
Wolfgang Gerlach, Wei Tang, Kevin P. Keegan, Travis Harrison, Andreas Wilke, Jared Bischof, Mark D'Souza, Scott Devoid, Daniel E. Murphy-Olson, Narayan Desai, Folker Meyer
Skyport: container-based execution environment management for multi-cloud scientific workflows. DataCloud@SC (2014)
Wei Tang, Jared Bischof, Narayan Desai, Kanak Mahadik, Wolfgang Gerlach, Travis Harrison, Andreas Wilke, Folker Meyer
Workload characterization for MG-RAST metagenomic data analytics service in the cloud. IEEE BigData (2014)
Wei Tang, Jonathan Jenkins, Folker Meyer, Robert B. Ross, Rajkumar Kettimuthu, Linda Winkler, Xi Yang, Thomas Lehman, Narayan Desai
Data-Aware Resource Scheduling for Multicloud Workflows: A Fine-Grained Simulation Approach. CloudCom (2014)
Wei Tang, Jared Wilkening, Narayan Desai, Wolfgang Gerlach, Andreas Wilke, Folker Meyer
A scalable data analysis platform for metagenomics. IEEE BigData (2013)
Kevin P. Keegan, William L. Trimble, Jared Wilkening, Andreas Wilke, Travis Harrison, Mark D'Souza, Folker Meyer
A Platform-Independent Method for Detecting Errors in Metagenomic Sequencing Data: DRISEE. PLoS Comput. Biol. 8 (6) (2012)
William L. Trimble, Kevin P. Keegan, Mark D'Souza, Andreas Wilke, Jared Wilkening, Jack A. Gilbert, Folker Meyer
Short-read reading-frame predictors are not created equal: sequence error causes loss of signal. BMC Bioinform. 13 (2012)
Andreas Wilke, Travis Harrison, Jared Wilkening, Dawn Field, Elizabeth M. Glass, Nikos Kyrpides, Konstantinos Mavrommatis, Folker Meyer
The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools. BMC Bioinform. 13 (2012)
Andreas Wilke, Jared Wilkening, Elizabeth M. Glass, Narayan Desai, Folker Meyer
An experience report: porting the MG-RAST rapid metagenomics analysis pipeline to the cloud. Concurr. Comput. Pract. Exp. 23 (17) (2011)
Peter E. Larsen, Frank Collart, Folker Meyer, Jack A. Gilbert
Predicted Relative Metabolomic Turnover - Predicting Changes in the Environmental Metabolome from the Metagenome. BIOINFORMATICS (2011)
Folker Meyer, Nikos Kyrpides
Proposal for Open Discussion - Informatics Challenges for Next Generation Sequencing Metagenomics Experiments. BIOINFORMATICS (2011)
Suparna Mitra, Paul Rupek, Daniel C. Richter, Tim Urich, Jack A. Gilbert, Folker Meyer, Andreas Wilke, Daniel H. Huson
Functional analysis of metagenomes and metatranscriptomes using SEED and KEGG. BMC Bioinform. 12 (S-1) (2011)
Jared Wilkening, Andreas Wilke, Narayan Desai, Folker Meyer
Using clouds for metagenomics: A case study. CLUSTER (2009)
Florent E. Angly, Dana Willner, Alejandra Prieto-Davó, Robert A. Edwards, Robert Schmieder, Rebecca Vega-Thurber, Dionysios A. Antonopoulos, Katie Barott, Matthew T. Cottrell, Christelle Desnues, Elizabeth A. Dinsdale, Mike Furlan, Matthew Haynes, Matthew R. Henn, Yongfei Hu, David L. Kirchman, Tracey McDole, John D. McPherson, Folker Meyer, R. Michael Miller, Egbert Mundt, Robert K. Naviaux, Beltran Rodriguez-Mueller, Rick Stevens, Linda Wegley, Lixin Zhang, Baoli Zhu, Forest Rohwer
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes. PLoS Comput. Biol. 5 (12) (2009)
Folker Meyer, Daniel Paarmann, Mark D'Souza, Robert Olson, Elizabeth M. Glass, Michael Kubal, Tobias Paczian, Alexis A. Rodriguez, Rick Stevens, Andreas Wilke, Jared Wilkening, Robert A. Edwards
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes. BMC Bioinform. 9 (2008)
Leslie Klis McNeil, Claudia Reich, Ramy K. Aziz, Daniela Bartels, Matthew Cohoon, Terry Disz, Robert A. Edwards, Svetlana Gerdes, Kaitlyn Hwang, Michael Kubal, Gohar Rem Margaryan, Folker Meyer, William Mihalo, Gary J. Olsen, Robert Olson, Andrei Osterman, Daniel Paarmann, Tobias Paczian, Bruce D. Parrello, Gordon D. Pusch, Dmitry A. Rodionov, Xinghua Shi, Olga Vassieva, Veronika Vonstein, Olga Zagnitko, Fangfang Xia, Jenifer Zinner, Ross A. Overbeek, Rick Stevens
The National Microbial Pathogen Database Resource (NMPDR): a genomics platform based on subsystem annotation. Nucleic Acids Res. 35 (Database-Issue) (2007)
Lutz Krause, Naryttza N. Diaz, Daniela Bartels, Robert A. Edwards, Alfred Pühler, Forest Rohwer, Folker Meyer, Jens Stoye
Finding novel genes in bacterial communities isolated from the environment. ISMB (Supplement of Bioinformatics) (2006)
Alexander Goesmann, Burkhard Linke, Daniela Bartels, Michael Dondrup, Lutz Krause, Heiko Neuweger, Sebastian Oehm, Tobias Paczian, Andreas Wilke, Folker Meyer
BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
Daniela Bartels, Sebastian Kespohl, Stefan P. Albaum, Tanja Drüke, Alexander Goesmann, Julia Herold, Olaf Kaiser, Alfred Pühler, Friedhelm Pfeiffer, Günter Raddatz, Jens Stoye, Folker Meyer, Stephan C. Schuster
BACCardI-a tool for the validation of genomic assemblies, assisting genome finishing and intergenome comparison. Bioinform. 21 (7) (2005)
Alice Carolyn McHardy, Alexander Goesmann, Alfred Pühler, Folker Meyer
Development of joint application strategies for two microbial gene finders. Bioinform. 20 (10) (2004)
Alexander Goesmann, Martin Haubrock, Folker Meyer, Jörn Kalinowski, Robert Giegerich
PathFinder: reconstruction and dynamic visualization of metabolic pathways. Bioinform. 18 (1) (2002)
Jens Stoye, Dirk Evers, Folker Meyer
Rose: generating sequence families. Bioinform. 14 (2) (1998)
Jens Stoye, Dirk Evers, Folker Meyer
Generating Benchmarks for Multiple Sequence Alignments and Phylogenic Reconstructions. ISMB (1997)
Robert Giegerich, Folker Meyer, Chris Schleiermacher
GeneFisher-Software Support for the Detection of Postulated Genes. ISMB (1996)