Ananth Grama

ORCID

Publication Activity (10 Years)

Years Active: 1992-2024
Publications (10 Years): 70

Top Venues

CoRR

J. Parallel Distributed Comput.

BCB

ISIT

Publications

Jaewoo Shin, Lan Zhao, Carol X. Song, Dikai Xu, Ming Qu, Ananth Grama, Dongyan Xu
Integrating ML/AI workflows in a Streaming Data Management and Processing Platform for Building Energy Research. PEARC (2024)
Yifan Wang, Vikram Ravindra, Ananth Grama
Deconvolving Complex Neuronal Networks into Interpretable Task-Specific Connectomes. CoRR (2024)
Bolian Li, Yifan Wang, Ananth Grama, Ruqi Zhang
Cascade Reward Sampling for Efficient Decoding-Time Alignment. CoRR (2024)
Changlong Wu, Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Regret Bounds for Log-Loss via Bayesian Algorithms. IEEE Trans. Inf. Theory 69 (9) (2023)
Changlong Wu, Ananth Grama, Wojciech Szpankowski
Online Learning in Dynamically Changing Environments. COLT (2023)
Vikram Ravindra, Huda Nassar, David F. Gleich, Ananth Grama
Aligning Spatially Constrained Graphs. IEEE Trans. Knowl. Data Eng. 35 (8) (2023)
Changlong Wu, Ananth Grama, Wojciech Szpankowski
Robust Online Classification: From Estimation to Denoising. CoRR (2023)
Changlong Wu, Yifan Wang, Ananth Grama, Wojciech Szpankowski
Learning Functional Distributions with Private Labels. ICML (2023)
Changlong Wu, Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Expected Worst Case Regret via Stochastic Sequential Covering. Trans. Mach. Learn. Res. 2023 (2023)
Changlong Wu, Ananth Grama, Wojciech Szpankowski
Online Learning in Dynamically Changing Environments. CoRR (2023)
Changlong Wu, Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Precise Regret Bounds for Log-loss via a Truncated Bayesian Algorithm. NeurIPS (2022)
Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Toward Physically Realizable Quantum Neural Networks. AAAI (2022)
Changlong Wu, Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Sequential vs. Fixed Design Regrets in Online Learning. ISIT (2022)
Changlong Wu, Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Precise Regret Bounds for Log-loss via a Truncated Bayesian Algorithm. CoRR (2022)
Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Toward Physically Realizable Quantum Neural Networks. CoRR (2022)
Riddhiman Adib, Md Mobasshir Arshed Naved, Chih-Hao Fang, Md. Osman Gani, Ananth Grama, Paul M. Griffin, Sheikh Iqbal Ahamed, Mohammad Adibuzzaman
CKH: Causal Knowledge Hierarchy for Estimating Structural Causal Models from Data and Priors. CoRR (2022)
Changlong Wu, Mohsen Heidari, Ananth Grama, Wojciech Szpankowski
Expected Worst Case Regret via Stochastic Sequential Covering. CoRR (2022)
Vikram Ravindra, Geoffrey Sanders, Ananth Grama
Identifying Coherent Subgraphs In Dynamic Brain Networks. ICIP (2021)
Vikram Ravindra, Ananth Grama
De-anonymization Attacks on Neuroimaging Datasets. SIGMOD Conference (2021)
Huda Nassar, Georgios Kollias, Ananth Grama, David F. Gleich
Scalable Algorithms for Multiple Network Alignment. SIAM J. Sci. Comput. 43 (5) (2021)
Xuejiao Kang, David F. Gleich, Ahmed H. Sameh, Ananth Grama
Adaptive Erasure Coded Fault Tolerant Linear System Solver. ACM Trans. Parallel Comput. 8 (4) (2021)
Karthik Kambatla, Vamsee Yarlagadda, Iñigo Goiri, Ananth Grama
Optimistic scheduling with service guarantees. J. Parallel Distributed Comput. 135 (2020)
Fatemeh Rouzbeh, Ananth Grama, Paul M. Griffin, Mohammad Adibuzzaman
A Unified Cloud-Native Architecture For Heterogeneous Data Aggregation And Computation. BCB (2020)
Eugenia-Maria Kontopoulou, Gregory-Paul Dexter, Wojciech Szpankowski, Ananth Grama, Petros Drineas
Randomized Linear Algebra Approaches to Estimate the von Neumann Entropy of Density Matrices. IEEE Trans. Inf. Theory 66 (8) (2020)
Fatemeh Rouzbeh, Ananth Grama, Paul M. Griffin, Mohammad Adibuzzaman
Collaborative Cloud Computing Framework for Health Data with Open Source Technologies. BCB (2020)
Chih-Hao Fang, Sudhir B. Kylasa, Fred Roosta, Michael W. Mahoney, Ananth Grama
Newton-ADMM: a distributed GPU-accelerated optimizer for multiclass classification problems. SC (2020)
Vikram Ravindra, Ananth Grama
Characterizing Similarity of Visual Stimulus from Associated Neuronal Response. IJCAI (2020)
Fatemeh Rouzbeh, Ananth Grama, Paul M. Griffin, Mohammad Adibuzzaman
Collaborative Cloud Computing Framework for Health Data with Open Source Technologies. CoRR (2020)
Tyler Cowman, Mustafa Coskun, Ananth Grama, Mehmet Koyutürk
Integrated querying and version control of context-specific biological networks. Database J. Biol. Databases Curation 2020 (2020)
Somali Chaterji, Jinkyu Koo, Ninghui Li, Folker Meyer, Ananth Grama, Saurabh Bagchi
Federation in genomics pipelines: techniques and challenges. Briefings Bioinform. 20 (1) (2019)
Vikram Ravindra, Ananth Grama
De-anonymization Attacks on Neuroimaging Datasets. CoRR (2019)
Chih-Hao Fang, Nawanol Theera-Ampornpunt, Michael A. Roth, Ananth Grama, Somali Chaterji
AIKYATAN: mapping distal regulatory elements using convolutional learning on GPU. BMC Bioinform. 20 (1) (2019)
Sudhir B. Kylasa, Fred (Farbod) Roosta, Michael W. Mahoney, Ananth Grama
GPU Accelerated Sub-Sampled Newton's Method for Convex Classification Problems. SDM (2019)
Vikram Ravindra, Huda Nassar, David F. Gleich, Ananth Grama
Rigid Graph Alignment. CoRR (2019)
Folker Meyer, Saurabh Bagchi, Somali Chaterji, Wolfgang Gerlach, Ananth Grama, Travis Harrison, Tobias Paczian, William L. Trimble, Andreas Wilke
MG-RAST version 4 - lessons learned from a decade of low-budget ultra-high-throughput metagenome analysis. Briefings Bioinform. 20 (4) (2019)
Vikram Ravindra, Huda Nassar, David F. Gleich, Ananth Grama
Rigid Graph Alignment. COMPLEX NETWORKS (1) (2019)
Sudhir B. Kylasa, Farbod Roosta-Khorasani, Michael W. Mahoney, Ananth Grama
GPU Accelerated Sub-Sampled Newton\textsf{'}s Method. CoRR (2018)
Naresh Rapolu, Srimat Chakradhar, Ananth Grama
VAYU: Accelerating stream processing applications through dynamic network-aware topology re-optimization. J. Parallel Distributed Comput. 111 (2018)
Eugenia-Maria Kontopoulou, Ananth Grama, Wojciech Szpankowski, Petros Drineas
Randomized Linear Algebra Approaches to Estimate the Von Neumann Entropy of Density Matrices. ISIT (2018)
Shiqing Ma, Yingqi Liu, Wen-Chuan Lee, Xiangyu Zhang, Ananth Grama
MODE: automated neural network model debugging via state differential analysis and input selection. ESEC/SIGSOFT FSE (2018)
Huda Nassar, Nate Veldt, Shahin Mohammadi, Ananth Grama, David F. Gleich
Low Rank Spectral Network Alignment. WWW (2018)
Chih-Hao Fang, Sudhir B. Kylasa, Farbod Roosta-Khorasani, Michael W. Mahoney, Ananth Grama
Distributed Second-order Convex Optimization. CoRR (2018)
Karthik Kambatla, Vamsee Yarlagadda, Iñigo Goiri, Ananth Grama
UBIS: Utilization-Aware Cluster Scheduling. IPDPS (2018)
Huda Nassar, Georgios Kollias, Ananth Grama, David F. Gleich
Low rank methods for multiple network alignment. CoRR (2018)
Vikram Ravindra, Petros Drineas, Ananth Grama
Constructing Compact Brain Connectomes for Individual Fingerprinting. CoRR (2018)
Wojciech Szpankowski, Ananth Grama
Frontiers of Science of Information: Shannon Meets Turing. Computer 51 (1) (2018)
Eugenia-Maria Kontopoulou, Ananth Grama, Wojciech Szpankowski, Petros Drineas
Randomized Linear Algebra Approaches to Estimate the Von Neumann Entropy of Density Matrices. CoRR (2018)
Mustafa Coskun, Ananth Grama, Mehmet Koyutürk
Indexed Fast Network Proximity Querying. Proc. VLDB Endow. 11 (8) (2018)
Thomas A. Courtade, Ananth Grama, Michael W. Mahoney, Tsachy Weissman
Principles and Applications of Science of Information. Proc. IEEE 105 (2) (2017)
Yao Zhu, David F. Gleich, Ananth Grama
Erasure Coding for Fault-Oblivious Linear System Solvers. SIAM J. Sci. Comput. 39 (1) (2017)
Ashraf Mahgoub, Sachandhan Ganesh, Folker Meyer, Ananth Grama, Somali Chaterji
Suitability of NoSQL systems - Cassandra and ScyllaDB - For IoT workloads. COMSNETS (2017)
Shahin Mohammadi, Neta S. Zuckerman, Andrea Goldsmith, Ananth Grama
A Critical Survey of Deconvolution Methods for Separating Cell Types in Complex Tissues. Proc. IEEE 105 (2) (2017)
Xuejiao Kang, David F. Gleich, Ahmed H. Sameh, Ananth Grama
Distributed Fault Tolerant Linear System Solvers Based on Erasure Coding. ICDCS (2017)
Ashraf Mahgoub, Paul Wood, Sachandhan Ganesh, Subrata Mitra, Wolfgang Gerlach, Travis Harrison, Folker Meyer, Ananth Grama, Saurabh Bagchi, Somali Chaterji
Rafiki: a middleware for parameter tuning of NoSQL datastores for dynamic metagenomics workloads. Middleware (2017)
Abram Magner, Ananth Grama, Jithin K. Sreedharan, Wojciech Szpankowski
Recovery of vertex orderings in dynamic graphs. ISIT (2017)
Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk
Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (6) (2017)
Shahin Mohammadi, David F. Gleich, Tamara G. Kolda, Ananth Grama
Triangular Alignment (TAME): A Tensor-Based Approach for Higher-Order Network Alignment. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (6) (2017)
Alex Pothen, Ananth Grama
Introduction to HiCOMB Workshop. IPDPS Workshops (2017)
Nawanol Theera-Ampornpunt, Seong Gon Kim, Asish Ghoshal, Saurabh Bagchi, Ananth Grama, Somali Chaterji
Fast training on large genomics data using distributed Support Vector Machines. COMSNETS (2016)
Sudhir B. Kylasa, Giorgios Kollias, Ananth Grama
Social ties and checkin sites: connections and latent structures in location-based social networks. Soc. Netw. Anal. Min. 6 (1) (2016)
Andreas Wilke, Jared Bischof, Wolfgang Gerlach, Elizabeth M. Glass, Travis Harrison, Kevin P. Keegan, Tobias Paczian, William L. Trimble, Saurabh Bagchi, Ananth Grama, Somali Chaterji, Folker Meyer
The MG-RAST metagenomics database and portal in 2015. Nucleic Acids Res. 44 (Database-Issue) (2016)
Abram Magner, Jaroslaw Duda, Wojciech Szpankowski, Ananth Grama
Fundamental Bounds for Sequence Reconstruction From Nanopore Sequencers. IEEE Trans. Mol. Biol. Multi Scale Commun. 2 (1) (2016)
Shahin Mohammadi, Ananth Grama
De novo identification of cell type hierarchy with application to compound marker detection. BCB (2016)
Mustafa Coskun, Ananth Grama, Mehmet Koyutürk
Efficient Processing of Network Proximity Queries via Chebyshev Acceleration. KDD (2016)
Seong Gon Kim, Nawanol Theera-Ampornpunt, Chih-Hao Fang, Mrudul Harwani, Ananth Grama, Somali Chaterji
Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions. BMC Syst. Biol. 10 (S-2) (2016)
Mohammad Adibuzzaman, Ken Musselman, Alistair E. W. Johnson, Paul Brown, Zachary Pitluk Pitluk, Ananth Grama
Closing the Data Loop: An Integrated Open Access Analysis Platform for the MIMIC Database. CinC (2016)
Jarek Duda, Wojciech Szpankowski, Ananth Grama
Fundamental Bounds and Approaches to Sequence Reconstruction from Nanopore Sequencers. CoRR (2016)
Abram Magner, Shahin Mohammadi, Ananth Grama
Combining Density and Overlap (CoDO): A New Method for Assessing the Significance of Overlap Among Subgraphs. CoRR (2016)
Shahin Mohammadi, Sudhir B. Kylasa, Giorgios Kollias, Ananth Grama
Context-Specific Recommendation System for Predicting Similar PubMed Articles. ICDM Workshops (2016)
Shahin Mohammadi, Ananth Grama
A convex optimization approach for identification of human tissue-specific interactomes. Bioinform. 32 (12) (2016)
Shahin Mohammadi, David F. Gleich, Tamara G. Kolda, Ananth Grama
Triangular Alignment (TAME): A Tensor-based Approach for Higher-order Network Alignment. CoRR (2015)
Sudhir B. Kylasa, Giorgios Kollias, Ananth Grama
Social ties and checkin sites: Connections and latent structures in Location Based Social Networks. ASONAM (2015)
Shahin Mohammadi, Neta S. Zuckerman, Andrea J. Goldsmith, Ananth Grama
A Critical Survey of Deconvolution Methods for Separating cell-types in Complex Tissues. CoRR (2015)
Asish Ghoshal, Ananth Grama, Saurabh Bagchi, Somali Chaterji
An ensemble SVM model for the accurate prediction of non-canonical MicroRNA targets. BCB (2015)
Shahin Mohammadi, Baharak Saberidokht, Shankar Subramaniam, Ananth Grama
Scope and limitations of yeast as a model organism for studying human tissue-specific pathways. BMC Syst. Biol. 9 (2015)
Seong Gon Kim, Nawanol Theera-Ampornpunt, Ananth Grama, Somali Chaterji
Interpretable deep neural networks for enhancer prediction. BIBM (2015)
Anmer Daskin, Ananth Grama, Sabre Kais
A universal quantum circuit scheme for finding complex eigenvalues. Quantum Inf. Process. 13 (2) (2014)
Giorgios Kollias, Efstratios Gallopoulos, Ananth Grama
Surfing the Network for Ranking by Multidamping. IEEE Trans. Knowl. Data Eng. 26 (9) (2014)
Anmer Daskin, Ananth Grama, Sabre Kais
Quantum Random State Generation with Predefined Entanglement Constraint. CoRR (2014)
Costas Bekas, Ananth Grama, Yousef Saad, Olaf Schenk
Parallel matrix algorithms. Parallel Comput. 40 (7) (2014)
Giorgios Kollias, Madan Sathe, Olaf Schenk, Ananth Grama
Fast parallel algorithms for graph similarity and matching. J. Parallel Distributed Comput. 74 (5) (2014)
Karthik Kambatla, Giorgios Kollias, Vipin Kumar, Ananth Grama
Trends in big data analytics. J. Parallel Distributed Comput. 74 (7) (2014)
David F. Gleich, Ananth Grama, Yao Zhu
Erasure coding for fault oblivious linear system solvers. CoRR (2014)
Anmer Daskin, Ananth Grama, Sabre Kais
Multiple network alignment on quantum computers. Quantum Inf. Process. 13 (12) (2014)
Sudhir B. Kylasa, Hasan Metin Aktulga, Ananth Grama
PuReMD-GPU: A reactive molecular dynamics simulation package for GPUs. J. Comput. Phys. 272 (2014)
Tobias Berka, Giorgios Kollias, Helge Hagenauer, Marián Vajtersic, Ananth Grama
Concurrent programming constructs for parallel MPI applications - The MPI threads library. J. Supercomput. 63 (2) (2013)
Naresh Rapolu, Srimat Chakradhar, Adnan Hassan, Ananth Grama
M-Lock: Accelerating Distributed Transactions on Key-Value Stores through Dynamic Lock Localization. IEEE CLOUD (2013)
Alex Verstak, Naren Ramakrishnan, Layne T. Watson, Jian He, Clifford A. Shaffer, Ananth Grama
Using hierarchical data mining to characterize performance of wireless system configurations. Adv. Eng. Softw. 65 (2013)
Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk
Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error. BCB (2013)
Anmer Daskin, Ananth Grama, Sabre Kais
Multiple Network Alignment on Quantum Computers. CoRR (2013)
Anmer Daskin, Ananth Grama, Sabre Kais
A Universal Quantum Circuit Scheme For Finding Complex Eigenvalues of Non-unitary Matrices CoRR (2013)
Shahin Mohammadi, Shankar Subramaniam, Ananth Grama
Inferring the effective TOR-dependent network: a computational study in yeast. BMC Syst. Biol. 7 (2013)
Shahin Mohammadi, Giorgios Kollias, Ananth Grama
Role of Synthetic Genetic Interactions in Understanding Functional Interactions Among Pathways. Pacific Symposium on Biocomputing (2012)
Anmer Daskin, Ananth Grama, Giorgios Kollias, Sabre Kais
Universal Programmable Quantum Circuit Schemes to Emulate an Operator CoRR (2012)
Hasan Metin Aktulga, Joseph C. Fogarty, Sagar A. Pandit, Ananth Grama
Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques. Parallel Comput. 38 (4-5) (2012)
Hasan Metin Aktulga, Sagar Pandit, Adri C. T. van Duin, Ananth Grama
Reactive Molecular Dynamics: Numerical Methods and Algorithmic Techniques. SIAM J. Sci. Comput. 34 (1) (2012)
Giorgios Kollias, Shahin Mohammadi, Ananth Grama
Network Similarity Decomposition (NSD): A Fast and Scalable Approach to Network Alignment. IEEE Trans. Knowl. Data Eng. 24 (12) (2012)
Naresh Rapolu, Karthik Kambatla, Suresh Jagannathan, Ananth Grama
TransMR: Data-Centric Programming Beyond Data Parallelism. HotCloud (2011)
Murat Manguoglu, Faisal Saied, Ahmed H. Sameh, Ananth Grama
Performance models for the Spike banded linear system solver. Sci. Program. 19 (1) (2011)
Murat Manguoglu, Faisal Saied, Ahmed H. Sameh, Ananth Grama
Performance Models for the Spike Banded Linear System Solver. ISPDC (2010)

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Publication Activity (10 Years)

Top Topics

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Ananth Grama