Thomas LaFramboise

Publication Activity (10 Years)

Years Active: 2004-2024
Publications (10 Years): 5

Top Topics

Profile Hidden Markov Models

Comparative Genomics

Top Venues

IEEE ACM Trans. Comput. Biol. Bioinform.

IEEE J. Biomed. Health Informatics

Comput. Stat. Data Anal.

Publications

Xuan Ma, Jenný Brynjarsdóttir, Thomas LaFramboise
A double Pólya-Gamma data augmentation scheme for a hierarchical Negative Binomial - Binomial data model. Comput. Stat. Data Anal. 199 (2024)
Janet Wang, Thomas LaFramboise
CytoConverter: a web-based tool to convert karyotypes to genomic coordinates. BMC Bioinform. 20 (1) (2019)
Colleen M. Bosworth, Sneha Grandhi, Meetha P. Gould, Thomas LaFramboise
Detection and quantification of mitochondrial DNA deletions from next-generation sequence data. BMC Bioinform. 18 (S-12) (2017)
M. Khalid Khan Niazi, Keluo Yao, Debra L. Zynger, Steven K. Clinton, James Chen, Mehmet Koyutürk, Thomas LaFramboise, Metin N. Gurcan
Visually Meaningful Histopathological Features for Automatic Grading of Prostate Cancer. IEEE J. Biomed. Health Informatics 21 (4) (2017)
Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk
Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree. IEEE ACM Trans. Comput. Biol. Bioinform. 14 (6) (2017)
Matthew Ruffalo, Holleh Husseinzadeh, Hideki Makishima, Bartlomiej Przychodzen, Mohamed Ashkar, Mehmet Koyutürk, Jaroslaw P. Maciejewski, Thomas LaFramboise
Whole-exome sequencing enhances prognostic classification of myeloid malignancies. J. Biomed. Informatics 58 (2015)
Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance
Session introduction. Pacific Symposium on Biocomputing (2013)
Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk
Suffix-Tree Based Error Correction of NGS Reads Using Multiple Manifestations of an Error. BCB (2013)
Matthew Ruffalo, Mehmet Koyutürk, Soumya Ray, Thomas LaFramboise
Accurate estimation of short read mapping quality for next-generation genome sequencing. Bioinform. 28 (18) (2012)
Matthew Ruffalo, Thomas LaFramboise, Mehmet Koyutürk
Comparative analysis of algorithms for next-generation sequencing read alignment. Bioinform. 27 (20) (2011)
Gökhan Yavas, Mehmet Koyutürk, Z. Meral Özsoyoglu, Meetha P. Gould, Thomas LaFramboise
COKGEN: A Software for the Identification of Rare Copy Number Variation from SNP Microarrays. Pacific Symposium on Biocomputing (2010)
Gökhan Yavas, Mehmet Koyutürk, Thomas LaFramboise
Optimization Algorithms for Identification and Genotyping of Copy Number Polymorphisms in Human Populations. PRIB (2010)
Ninad Dewal, Matthew L. Freedman, Thomas LaFramboise, Itsik Pe'er
Power to detect selective allelic amplification in genome-wide scans of tumor data. Bioinform. 26 (4) (2010)
Thomas LaFramboise, Wendy Winckler, Roman K. Thomas
A flexible rank-based framework for detecting copy number aberrations from array data. Bioinform. 25 (6) (2009)
Thomas LaFramboise, Barbara A. Weir, Xiaojun Zhao, Rameen Beroukhim, Cheng Li, David Harrington, William R. Sellers, Matthew Meyerson
Allele-Specific Amplification in Cancer Revealed by SNP Array Analysis. PLoS Comput. Biol. 1 (6) (2005)
Raji Balasubramanian, Thomas LaFramboise, Denise Scholtens, Robert Gentleman
A graph-theoretic approach to testing associations between disparate sources of functional genomics data. Bioinform. 20 (18) (2004)