Mark R. Chance

Publication Activity (10 Years)

Years Active: 2010-2022
Publications (10 Years): 8

Top Topics

Tandem Mass Spectrometry

Mammogram Images

Subcellular Localization

Top Venues

Pacific Symposium on Biocomputing

PLoS Comput. Biol.

Publications

Marzieh Ayati, Serhan Yilmaz, Mark R. Chance, Mehmet Koyutürk
Functional characterization of co-phosphorylation networks. Bioinform. 38 (15) (2022)
Marzieh Ayati, Mark R. Chance, Mehmet Koyutürk
Co-phosphorylation networks reveal subtype-specific signaling modules in breast cancer. Bioinform. 37 (2) (2021)
Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li, Mehmet Koyutürk, Mark R. Chance
CoPhosK: A method for comprehensive kinase substrate annotation using co-phosphorylation analysis. PLoS Comput. Biol. 15 (2) (2019)
Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Sean Maxwell, Ming Li, Mehmet Koyutürk, Mark R. Chance
CoPhosK: A Method for Comprehensive Kinase Substrate Annotation using Co-phosphorylation Analysis. BCB (2019)
Danica Wiredja, Mehmet Koyutürk, Mark R. Chance
The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics. Bioinform. 33 (21) (2017)
Sean Maxwell, Mark R. Chance, Mehmet Koyutürk
Linearity of network proximity measures: implications for set-based queries and significance testing. Bioinform. 33 (9) (2017)
Douglas Brubaker, Alethea Barbaro, Mark R. Chance, Sam Mesiano
A dynamical systems model of progesterone receptor interactions with inflammation in human parturition. BMC Syst. Biol. 10 (2016)
Marzieh Ayati, Danica Wiredja, Daniela Schlatzer, Goutham Narla, Mark R. Chance, Mehmet Koyutürk
MoBaS on Phosphorylation Data. BCB (2016)
Marzieh Ayati, Sinan Erten, Mark R. Chance, Mehmet Koyutürk
MOBAS: identification of disease-associated protein subnetworks using modularity-based scoring. EURASIP J. Bioinform. Syst. Biol. 2015 (2015)
Sean Maxwell, Mark R. Chance, Mehmet Koyutürk
Efficiently Enumerating All Connected Induced Subgraphs of a Large Molecular Network. AlCoB (2014)
Douglas Brubaker, Analisa Difeo, Yanwen Chen, Taylor Pearl, Kaide Zhai, Gürkan Bebek, Mark R. Chance, Jill S. Barnholtz-Sloan
Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance. Pacific Symposium on Biocomputing (2014)
Vishal N. Patel, Giridharan Gokulrangan, Salim A. Chowdhury, Yanwen Chen, Andrew E. Sloan, Mehmet Koyutürk, Jill S. Barnholtz-Sloan, Mark R. Chance
Network Signatures of Survival in Glioblastoma Multiforme. PLoS Comput. Biol. 9 (9) (2013)
Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance
Session introduction. Pacific Symposium on Biocomputing (2013)
George C. Linderman, Mark R. Chance, Gürkan Bebek
MAGNET: MicroArray Gene expression and Network Evaluation Toolkit. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Xiaowei Guan, Mark R. Chance, Jill S. Barnholtz-Sloan
Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypes. J. Clin. Bioinform. 2 (2012)
Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance
Network biology methods integrating biological data for translational science. Briefings Bioinform. 13 (4) (2012)
Yu Liu, Sean Maxwell, Tao Feng, Xiaofeng Zhu, Robert C. Elston, Mehmet Koyutürk, Mark R. Chance
Gene, pathway and network frameworks to identify epistatic interactions of single nucleotide polymorphisms derived from GWAS data. BMC Syst. Biol. 6 (S-3) (2012)
Parminder Kaur, Daniela Schlatzer, Kenneth Cooke, Mark R. Chance
Pairwise protein expression classifier for candidate biomarker discovery for early detection of human disease prognosis. BMC Bioinform. 13 (2012)
Sinan Erten, Marzieh Ayati, Yu Liu, Mark R. Chance, Mehmet Koyutürk
Algorithms for detecting complementary SNPs within a region of interest that are associated with diseases. BCB (2012)
Yu Liu, Mehmet Koyutürk, Jill S. Barnholtz-Sloan, Mark R. Chance
Gene interaction enrichment and network analysis to identify dysregulated pathways and their interactions in complex diseases. BMC Syst. Biol. 6 (2012)
Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk
Subnetwork State Functions Define Dysregulated Subnetworks in Cancer. J. Comput. Biol. 18 (3) (2011)
George C. Linderman, Vishal N. Patel, Mark R. Chance, Gürkan Bebek
BiC: a web server for calculating bimodality of coexpression between gene and protein networks. Bioinform. 27 (8) (2011)
Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price
Session Introduction. Pacific Symposium on Biocomputing (2011)
Yu Liu, Sanjay R. Patel, Rod K. Nibbe, Sean Maxwell, Salim A. Chowdhury, Mehmet Koyutürk, Xiaofeng Zhu, Emma Larkin, Sarah Buxbaum, Naresh Punjabi, Sina Gharib, Susan Redline, Mark R. Chance
Systems Biology Analyses of Gene Expression and Genome Wide Association Study Data in Obstructive Sleep Apnea. Pacific Symposium on Biocomputing (2011)
Jill S. Barnholtz-Sloan, Mark R. Chance
Century. J. Clin. Bioinform. 1 (2011)
Rod K. Nibbe, Mehmet Koyutürk, Mark R. Chance
An Integrative -omics Approach to Identify Functional Sub-Networks in Human Colorectal Cancer. PLoS Comput. Biol. 6 (1) (2010)
Salim A. Chowdhury, Rod K. Nibbe, Mark R. Chance, Mehmet Koyutürk
Subnetwork State Functions Define Dysregulated Subnetworks in Cancer. RECOMB (2010)
Gürkan Bebek, Vishal N. Patel, Mark R. Chance
PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling. BMC Bioinform. 11 (2010)