Gürkan Bebek

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 2

Top Topics

Biological Processes

Frequent Subgraph Mining

Interaction Patterns

Top Venues

Pacific Symposium on Biocomputing

Briefings Bioinform.

Nucleic Acids Res.

Publications

Arda Durmaz, Tim A. D. Henderson, Gürkan Bebek
Frequent Subgraph Mining of Functional Interaction Patterns Across Multiple Cancers. PSB (2021)
Arda Durmaz, Tim A. D. Henderson, Douglas Brubaker, Gürkan Bebek
Frequent Subgraph Mining of Personalized Signaling Pathway Networks Groups Patients with Frequently Dysregulated Disease Pathways and Predicts Prognosis. PSB (2017)
Douglas Brubaker, Analisa Difeo, Yanwen Chen, Taylor Pearl, Kaide Zhai, Gürkan Bebek, Mark R. Chance, Jill S. Barnholtz-Sloan
Drug Intervention Response Predictions with Paradigm (DIRPP) Identifies Drug Resistant Cancer Cell Lines and Pathway Mechanisms of Resistance. Pacific Symposium on Biocomputing (2014)
Gürkan Bebek, Mehmet Koyutürk, Thomas LaFramboise, Benjamin J. Raphael, Mark R. Chance
Session introduction. Pacific Symposium on Biocomputing (2013)
George C. Linderman, Mark R. Chance, Gürkan Bebek
MAGNET: MicroArray Gene expression and Network Evaluation Toolkit. Nucleic Acids Res. 40 (Web-Server-Issue) (2012)
Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance
Network biology methods integrating biological data for translational science. Briefings Bioinform. 13 (4) (2012)
Gürkan Bebek, Mohammed Orloff, Charis Eng
Microenvironmental genomic alterations reveal signaling networks for head and neck squamous cell carcinoma. J. Clin. Bioinform. 1 (2011)
Sinan Erten, Gürkan Bebek, Mehmet Koyutürk
Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks. RECOMB (2011)
George C. Linderman, Vishal N. Patel, Mark R. Chance, Gürkan Bebek
BiC: a web server for calculating bimodality of coexpression between gene and protein networks. Bioinform. 27 (8) (2011)
Sinan Erten, Gürkan Bebek, Rob M. Ewing, Mehmet Koyutürk
DADA: Degree-Aware Algorithms for Network-Based Disease Gene Prioritization. BioData Min. 4 (2011)
Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price
Session Introduction. Pacific Symposium on Biocomputing (2011)
Sinan Erten, Gürkan Bebek, Mehmet Koyutürk
Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks. J. Comput. Biol. 18 (11) (2011)
Gürkan Bebek, Vishal N. Patel, Mark R. Chance
PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling. BMC Bioinform. 11 (2010)
Sinan Erten, Xin Li, Gürkan Bebek, Jing Li, Mehmet Koyutürk
Phylogenetic analysis of modularity in protein interaction networks. BMC Bioinform. 10 (2009)
Gürkan Bebek, Jiong Yang
PathFinder: mining signal transduction pathway segments from protein-protein interaction networks. BMC Bioinform. 8 (2007)
Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp
The degree distribution of the generalized duplication model. Theor. Comput. Sci. 369 (1-3) (2006)
Gürkan Bebek, Petra Berenbrink, Colin Cooper, Tom Friedetzky, Joseph H. Nadeau, Süleyman Cenk Sahinalp
Improved Duplication Models for Proteome Network Evolution. Systems Biology and Regulatory Genomics (2005)