Nathan D. Price

Publication Activity (10 Years)

Years Active: 2006-2019
Publications (10 Years): 5

Top Topics

Biological Data

High Throughput

Top Venues

PLoS Comput. Biol.

Publications

Fangzhou Shen, Renliang Sun, Jie Yao, Jian Li, Qian Liu, Nathan D. Price, Chenguang Liu, Zhuo Wang
OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling. PLoS Comput. Biol. 15 (3) (2019)
Brendan King, Terry Farrah, Matthew A. Richards, Michael B. Mundy, Evangelos Simeonidis, Nathan D. Price
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. Bioinform. 34 (9) (2018)
Ravi K. Madduri, Kyle Chard, Michel D'Arcy, Segun Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory C. Funk, Benjamin D. Heavner, Matthew A. Richards, Paul Shannon, Gustavo Glusman, Nathan D. Price, Carl Kesselman, Ian T. Foster
Reproducible big data science: A case study in continuous FAIRness. RO (2018)
Kyle Chard, Mike D'Arcy, Benjamin D. Heavner, Ian T. Foster, Carl Kesselman, Ravi K. Madduri, Alexis Rodriguez, Stian Soiland-Reyes, Carole A. Goble, Kristi Clark, Eric W. Deutsch, Ivo D. Dinov, Nathan D. Price, Arthur W. Toga
I'll take that to go: Big data bags and minimal identifiers for exchange of large, complex datasets. IEEE BigData (2016)
Joseph Xu Zhou, Areejit Samal, Aymeric Fouquier d'Hérouël, Nathan D. Price, Sui Huang
Relative stability of network states in Boolean network models of gene regulation in development. Biosyst. (2016)
Benjamin D. Heavner, Nathan D. Price
Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction. PLoS Comput. Biol. 11 (11) (2015)
Arthur W. Toga, Ian T. Foster, Carl Kesselman, Ravi K. Madduri, Kyle Chard, Eric W. Deutsch, Nathan D. Price, Gustavo Glusman, Benjamin D. Heavner, Ivo D. Dinov, Joseph Ames, John D. Van Horn, Roger Kramer, Leroy E. Hood
Big biomedical data as the key resource for discovery science. J. Am. Medical Informatics Assoc. 22 (6) (2015)
Shuyi Ma, Kyle J. Minch, Tige R. Rustad, Samuel Hobbs, Suk-Lin Zhou, David R. Sherman, Nathan D. Price
. PLoS Comput. Biol. 11 (11) (2015)
Matthew N. Benedict, Michael B. Mundy, Christopher S. Henry, Nicholas Chia, Nathan D. Price
Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. PLoS Comput. Biol. 10 (10) (2014)
John C. Earls, James A. Eddy, Cory C. Funk, Youn-Hee Ko, Andrew T. Magis, Nathan D. Price
AUREA: an open-source software system for accurate and user-friendly identification of relative expression molecular signatures. BMC Bioinform. 14 (2013)
Benjamin D. Heavner, Kieran Smallbone, Nathan D. Price, Larry P. Walker
Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance. Database J. Biol. Databases Curation 2013 (2013)
Sriram Chandrasekaran, Nathan D. Price
Metabolic Constraint-Based Refinement of Transcriptional Regulatory Networks. PLoS Comput. Biol. 9 (12) (2013)
Jaeyun Sung, Pan-Jun Kim, Shuyi Ma, Cory C. Funk, Andrew T. Magis, Yuliang Wang, Leroy E. Hood, Donald Geman, Nathan D. Price
Multi-study Integration of Brain Cancer Transcriptomes Reveals Organ-Level Molecular Signatures. PLoS Comput. Biol. 9 (7) (2013)
Gürkan Bebek, Mehmet Koyutürk, Nathan D. Price, Mark R. Chance
Network biology methods integrating biological data for translational science. Briefings Bioinform. 13 (4) (2012)
Andrew T. Magis, Nathan D. Price
The top-scoring 'N' algorithm: a generalized relative expression classification method from small numbers of biomolecules. BMC Bioinform. 13 (2012)
Yuliang Wang, James A. Eddy, Nathan D. Price
Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE. BMC Syst. Biol. 6 (2012)
Andrew T. Magis, John C. Earls, Youn-Hee Ko, James A. Eddy, Nathan D. Price
Graphics processing unit implementations of relative expression analysis algorithms enable dramatic computational speedup. Bioinform. 27 (6) (2011)
Pan-Jun Kim, Nathan D. Price
Genetic Co-Occurrence Network across Sequenced Microbes. PLoS Comput. Biol. 7 (12) (2011)
Caroline B. Milne, James A. Eddy, Ravali Raju, Soroush Ardekani, Pan-Jun Kim, Ryan S. Senger, Yong-Su Jin, Hans P. Blaschek, Nathan D. Price
Metabolic network reconstruction and genome-scale model of butanol-producing strain Clostridium beijerinckii NCIMB 8052. BMC Syst. Biol. 5 (2011)
Gürkan Bebek, Mehmet Koyutürk, Mark R. Chance, Nathan D. Price
Session Introduction. Pacific Symposium on Biocomputing (2011)
David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich
Biological information as set-based complexity. IEEE Trans. Inf. Theory 56 (2) (2010)
James A. Eddy, Leroy E. Hood, Nathan D. Price, Donald Geman
Identifying Tightly Regulated and Variably Expressed Networks by Differential Rank Conservation (DIRAC). PLoS Comput. Biol. 6 (5) (2010)
Olgica Milenkovic, Gil Alterovitz, Gerard Battail, Todd P. Coleman, Joachim Hagenauer, Sean P. Meyn, Nathan D. Price, Marco Ramoni, Ilya Shmulevich, Wojciech Szpankowski
Introduction to the special issue on information theory in molecular biology and neuroscience. IEEE Trans. Inf. Theory 56 (2) (2010)
David J. Galas, Matti Nykter, Gregory W. Carter, Nathan D. Price, Ilya Shmulevich
Set-based complexity and biological information CoRR (2008)
Timothy E. Allen, Nathan D. Price, Andrew R. Joyce, Bernhard Ø. Palsson
Long-Range Periodic Patterns in Microbial Genomes Indicate Significant Multi-Scale Chromosomal Organization. PLoS Comput. Biol. 2 (1) (2006)
Erwin P. Gianchandani, Jason A. Papin, Nathan D. Price, Andrew R. Joyce, Bernhard Ø. Palsson
Matrix Formalism to Describe Functional States of Transcriptional Regulatory Systems. PLoS Comput. Biol. 2 (8) (2006)
Christian L. Barrett, Nathan D. Price, Bernhard O. Palsson
Network-level analysis of metabolic regulation in the human red blood cell using random sampling and singular value decomposition. BMC Bioinform. 7 (2006)
Scott A. Becker, Nathan D. Price, Bernhard O. Palsson
Metabolite coupling in genome-scale metabolic networks. BMC Bioinform. 7 (2006)