Nicholas Chia

Publication Activity (10 Years)

Years Active: 2005-2024
Publications (10 Years): 12

Top Topics

Inverse Reinforcement Learning

Top Venues

PLoS Comput. Biol.

Nucleic Acids Res.

Publications

Tianshu Feng, Rohan Gnanaolivu, Abolfazl Safikhani, Yuanhang Liu, Jun Jiang, Nicholas Chia, Alexander Partin, Priyanka Vasanthakumari, Yitan Zhu, Chen Wang
Variational and Explanatory Neural Networks for Encoding Cancer Profiles and Predicting Drug Responses. CoRR (2024)
Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). Nucleic Acids Res. 49 (Database-Issue) (2021)
Kia Khezeli, Arno Blaas, Frank Soboczenski, Nicholas Chia, John Kalantari
On Invariance Penalties for Risk Minimization. CoRR (2021)
Odhran O'Donoghue, Paul Duckworth, Giuseppe Ughi, Linus Scheibenreif, Kia Khezeli, Adrienne Hoarfrost, Samuel Budd, Patrick Foley, Nicholas Chia, John Kalantari, Graham Mackintosh, Frank Soboczenski, Lauren M. Sanders
Invariant Risk Minimisation for Cross-Organism Inference: Substituting Mouse Data for Human Data in Human Risk Factor Discovery. CoRR (2021)
Samuel Budd, Arno Blaas, Adrienne Hoarfrost, Kia Khezeli, Krittika D'Silva, Frank Soboczenski, Graham Mackintosh, Nicholas Chia, John Kalantari
Prototyping CRISP: A Causal Relation and Inference Search Platform applied to Colorectal Cancer Data. LifeTech (2021)
Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. Nucleic Acids Res. 49 (Database-Issue) (2021)
James D. Brunner, Nicholas Chia
Minimizing the number of optimizations for efficient community dynamic flux balance analysis. PLoS Comput. Biol. 16 (9) (2020)
Leah L. Weber, Nuraini Aguse, Nicholas Chia, Mohammed El-Kebir
PhyDOSE: Design of follow-up single-cell sequencing experiments of tumors. PLoS Comput. Biol. 16 (10) (2020)
John Kalantari, Heidi Nelson, Nicholas Chia
The Unreasonable Effectiveness of Inverse Reinforcement Learning in Advancing Cancer Research. AAAI (2020)
Saurabh Baheti, Xiaojia Tang, Daniel R. O'Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna R. Kalari
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. BMC Bioinform. 19 (1) (2018)
Michael B. Mundy, Helena Mendes-Soares, Nicholas Chia
Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models. Bioinform. 33 (15) (2017)
Helena Mendes-Soares, Michael B. Mundy, Luis Mendes Soares, Nicholas Chia
MMinte: an application for predicting metabolic interactions among the microbial species in a community. BMC Bioinform. 17 (2016)
Matthew N. Benedict, Michael B. Mundy, Christopher S. Henry, Nicholas Chia, Nathan D. Price
Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. PLoS Comput. Biol. 10 (10) (2014)
Fang Yang, Nicholas Chia, Bryan A. White, Lawrence B. Schook
Compression-based distance (CBD): a simple, rapid, and accurate method for microbiota composition comparison. BMC Bioinform. 14 (2013)
Yuheng Li, Nicholas Chia, Mario Lauria, Ralf Bundschuh
A performance enhanced PSI-BLAST based on hybrid alignment. Bioinform. 27 (1) (2011)
Carl J. Yeoman, Nicholas Chia, Suleyman Yildirim, Margret E. Berg Miller, Angela Kent, Rebecca Stumpf, Steven R. Leigh, Karen E. Nelson, Bryan A. White, Brenda A. Wilson
Towards an Evolutionary Model of Animal-Associated Microbiomes. Entropy 13 (3) (2011)
Nicholas Chia, Ralf Bundschuh
A Practical Approach to Significance Assessment in Alignment with Gaps. J. Comput. Biol. 13 (2) (2006)
Nicholas Chia, Ralf Bundschuh
A Practical Approach to Significance Assessment in Alignment with Gaps. RECOMB (2005)