Robert W. Cottingham

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 4

Top Topics

Biological Processes

Biochemical Networks

Systems Biology

Mathematical Modeling

Top Venues

Nucleic Acids Res.

Publications

Alexis L. Marsh, Myra B. Cohen, Robert W. Cottingham
CORE: Comparable, Open, Reliable, Extensible Software: An Experience Report of Four Flux Balance Analysis Tools. BCB (2023)
Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). Nucleic Acids Res. 49 (Database-Issue) (2021)
Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. Nucleic Acids Res. 49 (Database-Issue) (2021)
Mikaela Cashman, Myra B. Cohen, Priya Ranjan, Robert W. Cottingham
Navigating the maze: the impact of configurability in bioinformatics software. ASE (2018)
Robert W. Cottingham
The DOE systems biology knowledgebase (KBase): progress towards a system for collaborative and reproducible inference and modeling of biological function. BCB (2015)
Robert W. Cottingham
The DOE systems biology knowledgebase (KBase): progress towards a system for collaborative and reproducible inference and modeling of biological function. BCB (2014)
Shelton D. Griffith, Daniel Quest, Thomas S. Brettin, Robert W. Cottingham
Scenario driven data modelling: a method for integrating diverse sources of data and data streams. BMC Bioinform. 12 (S-10) (2011)
Daniel Quest, Miriam L. Land, Thomas S. Brettin, Robert W. Cottingham
Next generation models for storage and representation of microbial biological annotation. BMC Bioinform. 11 (S-6) (2010)
Beth K. Gatewood, Robert W. Cottingham
Mouse-human Comparative Map Resources on the Web. Briefings Bioinform. 1 (1) (2000)
Stanley Letovsky, Robert W. Cottingham, Christopher J. Porter, Peter W. D. Li
GDB: the Human Genome Database. Nucleic Acids Res. 26 (1) (1998)
Kenneth H. Fasman, Stanley Letovsky, Peter W. D. Li, Robert W. Cottingham, David T. Kingsbury
The GDB Human Genome Database Anno 1997. Nucleic Acids Res. 25 (1) (1997)
Kenneth H. Fasman, Stanley Letovsky, Robert W. Cottingham, David T. Kingsbury
Improvements to the GDB Human Genome Data Base. Nucleic Acids Res. 24 (1) (1996)