Michael B. Mundy

Publication Activity (10 Years)

Years Active: 2005-2021
Publications (10 Years): 5

Top Topics

Mathematical Modeling

Geographic Areas

High Throughput

Top Venues

Nucleic Acids Res.

PLoS Comput. Biol.

Publications

Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes (Corrigendum). Nucleic Acids Res. 49 (Database-Issue) (2021)
Samuel M. D. Seaver, Filipe Liu, Qizhi Zhang, James G. Jeffryes, José P. Faria, Janaka N. Edirisinghe, Michael B. Mundy, Nicholas Chia, Elad Noor, Moritz Emanuel Beber, Aaron A. Best, Matthew DeJongh, Jeffrey A. Kimbrel, Patrik D'haeseleer, Sean R. McCorkle, Jay R. Bolton, Erik Pearson, Shane Canon, Elisha M. Wood-Charlson, Robert W. Cottingham, Adam P. Arkin, Christopher S. Henry
The ModelSEED Biochemistry Database for the integration of metabolic annotations and the reconstruction, comparison and analysis of metabolic models for plants, fungi and microbes. Nucleic Acids Res. 49 (Database-Issue) (2021)
Brendan King, Terry Farrah, Matthew A. Richards, Michael B. Mundy, Evangelos Simeonidis, Nathan D. Price
ProbAnnoWeb and ProbAnnoPy: probabilistic annotation and gap-filling of metabolic reconstructions. Bioinform. 34 (9) (2018)
Michael B. Mundy, Helena Mendes-Soares, Nicholas Chia
Mackinac: a bridge between ModelSEED and COBRApy to generate and analyze genome-scale metabolic models. Bioinform. 33 (15) (2017)
Helena Mendes-Soares, Michael B. Mundy, Luis Mendes Soares, Nicholas Chia
MMinte: an application for predicting metabolic interactions among the microbial species in a community. BMC Bioinform. 17 (2016)
Matthew N. Benedict, Michael B. Mundy, Christopher S. Henry, Nicholas Chia, Nathan D. Price
Likelihood-Based Gene Annotations for Gap Filling and Quality Assessment in Genome-Scale Metabolic Models. PLoS Comput. Biol. 10 (10) (2014)
José E. Moreira, Valentina Salapura, George Almási, Charles Archer, Ralph Bellofatto, Peter Bergner, Randy Bickford, Matthias A. Blumrich, José R. Brunheroto, Arthur A. Bright, Michael Brutman, José G. Castaños, Dong Chen, Paul Coteus, Paul Crumley, Sam Ellis, Thomas Engelsiepen, Alan Gara, Mark Giampapa, Tom Gooding, Shawn Hall, Ruud A. Haring, Roger L. Haskin, Philip Heidelberger, Dirk Hoenicke, Todd Inglett, Gerard V. Kopcsay, Derek Lieber, David Limpert, Patrick McCarthy, Mark Megerian, Michael B. Mundy, Martin Ohmacht, Jeff Parker, Rick A. Rand, Don Reed, Ramendra K. Sahoo, Alda Sanomiya, Richard Shok, Brian E. Smith, Gordon G. Stewart, Todd Takken, Pavlos Vranas, Brian P. Wallenfelt, Michael Blocksome, Joe Ratterman
The Blue Gene/L Supercomputer: A Hardware and Software Story. Int. J. Parallel Program. 35 (3) (2007)
José E. Moreira, Michael Brutman, José G. Castaños, Thomas Engelsiepen, Mark Giampapa, Tom Gooding, Roger L. Haskin, Todd Inglett, Derek Lieber, Patrick McCarthy, Michael B. Mundy, Jeff Parker, Brian P. Wallenfelt
Blue Gene system software - Designing a highly-scalable operating system: the Blue Gene/L story. SC (2006)
Michael Blocksome, Charles Archer, Todd Inglett, Patrick McCarthy, Michael B. Mundy, Joe Ratterman, A. Sidelnik, Brian E. Smith, George Almási, José G. Castaños, Derek Lieber, José E. Moreira, Sriram Krishnamoorthy, Vinod Tipparaju, Jarek Nieplocha
Blue Gene system software - Design and implementation of a one-sided communication interface for the IBM eServer Blue Gene® supercomputer. SC (2006)
José E. Moreira, George Almási, Charles Archer, Ralph Bellofatto, Peter Bergner, José R. Brunheroto, Michael Brutman, José G. Castaños, Paul Crumley, Manish Gupta, Todd Inglett, Derek Lieber, David Limpert, Patrick McCarthy, Mark Megerian, Mark P. Mendell, Michael B. Mundy, Don Reed, Ramendra K. Sahoo, Alda Sanomiya, Richard Shok, Brian E. Smith, Greg G. Stewart
Blue Gene/L programming and operating environment. IBM J. Res. Dev. 49 (2-3) (2005)