Krishna R. Kalari

Publication Activity (10 Years)

Years Active: 2006-2020
Publications (10 Years): 7

Top Topics

Mixture Components

Data Mining And Statistical

Top Venues

Briefings Bioinform.

Publications

Wenjiang Deng, Tian Mou, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu
Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data. Bioinform. 36 (3) (2020)
Trung-Nghia Vu, Ha-Nam Nguyen, Stefano Calza, Krishna R. Kalari, Liewei Wang, Yudi Pawitan
Cell-level somatic mutation detection from single-cell RNA sequencing. Bioinform. 35 (22) (2019)
Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Mattias Rantalainen
Isoform-level gene expression patterns in single-cell RNA-sequencing data. Bioinform. 34 (14) (2018)
Saurabh Baheti, Xiaojia Tang, Daniel R. O'Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna R. Kalari
HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data. BMC Bioinform. 19 (1) (2018)
Arjun P. Athreya, Alan J. Gaglio, Zbigniew T. Kalbarczyk, Ravishankar K. Iyer, Junmei Cairns, Krishna R. Kalari, Richard M. Weinshilboum, Liewei Wang
Unsupervised single-cell analysis in triple-negative breast cancer: A case study. BIBM (2016)
Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan
Beta-Poisson model for single-cell RNA-seq data analyses. Bioinform. 32 (14) (2016)
Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment. Briefings Bioinform. 17 (5) (2016)
Krishna R. Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher
MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing. BMC Bioinform. 15 (2014)
Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher
TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data. Bioinform. 28 (2) (2012)
Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz
A knowledge-based approach to predict intragenic deletions or duplications. Bioinform. 24 (18) (2008)
Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz
First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome. Silico Biol. 6 (3) (2006)