Khader Shameer

Publication Activity (10 Years)

Years Active: 2006-2021
Publications (10 Years): 15

Top Topics

Machine Learning

Electronic Health Records

Top Venues

Briefings Bioinform.

Publications

Ulzee An, Ankit Bhardwaj, Khader Shameer, Lakshminarayanan Subramanian
High Precision Mammography Lesion Identification From Imprecise Medical Annotations. Frontiers Big Data 4 (2021)
Christopher Yacoumatos, Stefano Bragaglia, Anshul Kanakia, Nils Svangård, Jonathan Mangion, Claire Donoghue, Jim Weatherall, Faisal M. Khan, Khader Shameer
TrialGraph: Machine Intelligence Enabled Insight from Graph Modelling of Clinical Trials. CoRR (2021)
Ramya Dhatri Vunikili, Benjamin S. Glicksberg, Kipp W. Johnson, Joel T. Dudley, Lakshminarayanan Subramanian, Khader Shameer
Predictive Modelling of Susceptibility to Substance Abuse, Mortality and Drug-Drug Interactions in Opioid Patients. Frontiers Artif. Intell. 4 (2021)
Emmette R. Hutchison, Youyi Zhang, Sreenath Nampally, Jim Weatherall, Faisal M. Khan, Khader Shameer
Uncovering Machine Learning-Ready Data from Public Clinical Trial Resources: A case-study on normalization across Aggregate Content of ClinicalTrials.gov. BIBM (2020)
Andrew C. Liu, Krishna Patel, Ramya Dhatri Vunikili, Kipp W. Johnson, Fahad Abdu, Shivani Kamath Belman, Benjamin S. Glicksberg, Pratyush Tandale, Roberto Fontanez, Oommen K. Mathew, Andrew Kasarskis, Priyabrata Mukherjee, Lakshminarayanan Subramanian, Joel T. Dudley, Khader Shameer
Sepsis in the era of data-driven medicine: personalizing risks, diagnoses, treatments and prognoses. Briefings Bioinform. 21 (4) (2020)
Marcus A. Badgeley, Manway Liu, Benjamin S. Glicksberg, Mark M. Shervey, John R. Zech, Khader Shameer, Joseph Lehar, Eric K. Oermann, Michael V. McConnell, Thomas M. Snyder, Joel T. Dudley
CANDI: an R package and Shiny app for annotating radiographs and evaluating computer-aided diagnosis. Bioinform. 35 (9) (2019)
Khader Shameer, M. Mercedes Perez-Rodriguez, Roy Bachar, Li Li, Amy Johnson, Kipp W. Johnson, Benjamin S. Glicksberg, Milo R. Smith, Ben Readhead, Joseph Scarpa, Jebakumar Jebakaran, Patricia A. Kovatch, Sabina Lim, Wayne K. Goodman, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Joel T. Dudley
Pharmacological risk factors associated with hospital readmission rates in a psychiatric cohort identified using prescriptome data mining. BMC Medical Informatics Decis. Mak. 18 (S-3) (2018)
Kipp W. Johnson, Benjamin S. Glicksberg, Rachel Hodos, Khader Shameer, Joel T. Dudley
Causal inference on electronic health records to assess blood pressure treatment targets: An application of the parametric g formula. PSB (2018)
Benjamin S. Glicksberg, Riccardo Miotto, Kipp W. Johnson, Khader Shameer, Li Li, Rong Chen, Joel T. Dudley
Automated disease cohort selection using word embeddings from Electronic Health Records. PSB (2018)
Ulzee An, Khader Shameer, Lakshmi Subramanian
Mammography Assessment using Multi-Scale Deep Classifiers. CoRR (2018)
Khader Shameer, Benjamin S. Glicksberg, Rachel Hodos, Kipp W. Johnson, Marcus A. Badgeley, Ben Readhead, Max S. Tomlinson, Timothy O'Connor, Riccardo Miotto, Brian A. Kidd, Rong Chen, Avi Ma'ayan, Joel T. Dudley
Systematic analyses of drugs and disease indications in RepurposeDB reveal pharmacological, biological and epidemiological factors influencing drug repositioning. Briefings Bioinform. 19 (4) (2018)
Khader Shameer, Kipp W. Johnson, Alexandre Yahi, Riccardo Miotto, Li Li, Doran Ricks, Jebakumar Jebakaran, Patricia A. Kovatch, Partho P. Sengupta, Annetine Gelijns, Alan Moskovitz, Bruce Darrow, David L. Reich, Andrew Kasarskis, Nicholas P. Tatonetti, Deborah F. Pinney, Joel T. Dudley
Predictive Modeling of Hospital Readmission Rates Using Electronic Medical Record-Wide Machine Learning: A Case-Study Using Mount Sinai Heart Failure Cohort. PSB (2017)
Khader Shameer, Marcus A. Badgeley, Riccardo Miotto, Benjamin S. Glicksberg, Joseph W. Morgan, Joel T. Dudley
Translational bioinformatics in the era of real-time biomedical, health care and wellness data streams. Briefings Bioinform. 18 (1) (2017)
Benjamin S. Glicksberg, Li Li, Marcus A. Badgeley, Khader Shameer, Roman Kosoy, Noam D. Beckmann, Nam Pho, Jörg Hakenberg, Meng Ma, Kristin L. Ayers, Gabriel E. Hoffman, Shuyu Dan Li, Eric E. Schadt, Chirag J. Patel, Rong Chen, Joel T. Dudley
Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks. Bioinform. 32 (12) (2016)
Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini
Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment. Briefings Bioinform. 17 (5) (2016)
Benjamin S. Glicksberg, Li Li, Wei-Yi Cheng, Khader Shameer, Jörg Hakenberg, Rafael Castellanos, Meng Ma, Lisong Shi, Hardik Shah, Joel T. Dudley, Rong Chen
An Integrative Pipeline for Multi-Modal Discovery of Disease Relationships. Pacific Symposium on Biocomputing (2015)
Rizwan Masud, Khader Shameer, Aparna Dhar, Keyue Ding, Iftikhar J. Kullo
Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease. J. Clin. Bioinform. 2 (2012)
Khader Shameer, Ramanathan Sowdhamini
Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome. J. Clin. Bioinform. 2 (2012)
Giovanni Marco Dall'Olio, Jacopo Marino, Michael Schubert, Kevin L. Keys, Melanie I. Stefan, Colin S. Gillespie, Pierre Poulain, Khader Shameer, Robert Sugar, Brandon M. Invergo, Lars Juhl Jensen, Jaume Bertranpetit, Hafid Laayouni
Ten Simple Rules for Getting Help from Online Scientific Communities. PLoS Comput. Biol. 7 (9) (2011)
Khader Shameer, Prashant Shingate, S. C. P. Manjunath, M. Karthika, Ganesan Pugalenthi, Ramanathan Sowdhamini
3DSwap: curated knowledgebase of proteins involved in 3D domain swapping. Database J. Biol. Databases Curation 2011 (2011)
Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, István Albert
BioStar: An Online Question & Answer Resource for the Bioinformatics Community. PLoS Comput. Biol. 7 (10) (2011)
Pandurangan Sundaramurthy, Raashi Sreenivasan, Khader Shameer, Sunita Gakkhar, Ramanathan Sowdhamini
Poster: HORIBALFRE: Higher Order Residue Interactions Based ALgorithm for Fold REcognition. ICCABS (2011)
V. S. Gowri, Khader Shameer, Chilamakuri Chandra Sekhar Reddy, Prashant Shingate, Ramanathan Sowdhamini
A Sequence Data Mining Protocol to Identify Best Representative Sequence for Protein Domain Families. ICDM Workshops (2010)
Pandurangan Sundaramurthy, Khader Shameer, Raashi Sreenivasan, Sunita Gakkhar, Ramanathan Sowdhamini
HORI: a web server to compute Higher Order Residue Interactions in protein structures. BMC Bioinform. 11 (S-1) (2010)
Khader Shameer, Lalima L. Madan, Shivamurthy Veeranna, Balasubramanian Gopal, Ramanathan Sowdhamini
PeptideMine - A webserver for the design of peptides for protein-peptide binding studies derived from protein-protein interactomes. BMC Bioinform. 11 (2010)
Khader Shameer, Paramasivam Nagarajan, Kumar Gaurav, Ramanathan Sowdhamini
3PFDB - A database of Best Representative PSSM Profiles (BRPs) of Protein Families generated using a novel data mining approach. BioData Min. 2 (2009)
Chilamakuri Chandra Sekhar Reddy, Khader Shameer, Bernard O. Offmann, Ramanathan Sowdhamini
PURE: A webserver for the prediction of domains in unassigned regions in proteins. BMC Bioinform. 9 (2008)
Ganesan Pugalenthi, Khader Shameer, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
HARMONY: a server for the assessment of protein structures. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)