Narayanaswamy Srinivasan

Publication Activity (10 Years)

Years Active: 2001-2022
Publications (10 Years): 5

Top Topics

Comparative Genomics

Protein Structure

Top Venues

Database J. Biol. Databases Curation

PLoS Comput. Biol.

Source Code Biol. Medicine

Publications

Neha V. Kalmankar, Murugavel Pavalam, Sowmya Indrakumar, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
DSDBASE 2.0: updated version of DiSulphide dataBASE, a database on disulphide bonds in proteins. Database J. Biol. Databases Curation 2022 (2022) (2022)
Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
Shaking the β-Bulges. IEEE ACM Trans. Comput. Biol. Bioinform. 19 (1) (2022)
Guilhem Faure, Agnel Praveen Joseph, Pierrick Craveur, Tarun J. Narwani, Narayanaswamy Srinivasan, Jean-Christophe Gelly, Joseph Rebehmed, Alexandre G. de Brevern
iPBAvizu: a PyMOL plugin for an efficient 3D protein structure superimposition approach. Source Code Biol. Medicine 14 (1) (2019)
Raju Kalaivani, Raju Reema, Narayanaswamy Srinivasan
Recognition of sites of functional specialisation in all known eukaryotic protein kinase families. PLoS Comput. Biol. 14 (2) (2018)
Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan
Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains. PLoS Comput. Biol. 14 (2) (2018)
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015)
Rahul Metri, Sridhar Hariharaputran, Gayatri Ramakrishnan, Praveen Anand, Upadhyayula S. Raghavender, Bernardo Ochoa-Montaño, Alicia P. Higueruelo, Ramanathan Sowdhamini, Nagasuma R. Chandra, Tom L. Blundell, Narayanaswamy Srinivasan
. Database J. Biol. Databases Curation 2015 (2015)
Richa Mudgal, Sankaran Sandhya, Gayatri Kumar, Ramanathan Sowdhamini, Nagasuma R. Chandra, Narayanaswamy Srinivasan
NrichD database: sequence databases enriched with computationally designed protein-like sequences aid in remote homology detection. Nucleic Acids Res. 43 (Database-Issue) (2015)
R. Rakshambikai, Narayanaswamy Srinivasan, Rupali A. Gadkari
Repertoire of protein kinases Encoded in the genome of zebrafish shows remarkably Large Population of PIM kinases. J. Bioinform. Comput. Biol. 12 (1) (2014)
Mutharasu Gnanavel, Prachi Mehrotra, Ramaswamy Rakshambikai, Juliette Martin, Narayanaswamy Srinivasan, Ramachandra M. Bhaskara
CLAP: A web-server for automatic classification of proteins with special reference to multi-domain proteins. BMC Bioinform. 15 (2014)
Swapnil Mahajan, Garima Agarwal, Mohammed Iftekhar, Bernard O. Offmann, Alexandre G. de Brevern, Narayanaswamy Srinivasan
DoSA: Database of Structural Alignments. Database J. Biol. Databases Curation 2013 (2013)
Oruganty Krishnadev, Narayanaswamy Srinivasan
AlignHUSH : Alignment of HMMs Using Structure and Hydrophobicity information. BMC Bioinform. 12 (2011)
Jean-Christophe Gelly, Agnel Praveen Joseph, Narayanaswamy Srinivasan, Alexandre G. de Brevern
iPBA: a tool for protein structure comparison using sequence alignment strategies. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Narayanaswamy Srinivasan, Garima Agarwal, Ramachandra M. Bhaskara, Rupali A. Gadkari, Oruganty Krishnadev, B. Lakshmi, Swapnil Mahajan, Smita Mohanty, Richa Mudgal, R. Rakshambikai, Sankaran Sandhya, G. Sudha, L. S. Swapna, N. Tyagi
Influence of Genomic and Other Biological Data Sets in the Understanding of Protein Structures, Functions and Interactions. Int. J. Knowl. Discov. Bioinform. 2 (1) (2011)
Oruganty Krishnadev, Shveta Bisht, Narayanaswamy Srinivasan
Prediction of Protein-Protein Interactions Between Human Host and Two Mycobacterial Organisms. Int. J. Knowl. Discov. Bioinform. 1 (1) (2010)
Smita Mohanty, Narayanaswamy Srinivasan
How effective is the data on co-occurrence of domains in multi-domain proteins in prediction of protein-protein interactions? GENSiPS (2009)
Ambrish Roy, Narayanaswamy Srinivasan, Venkatraman S. Gowri
Molecular and Structural Basis of Drift in the Functions of Closely-Related Homologous Enzyme Domains: Implications for Function Annotation Based on Homology Searches and Structural Genomics. Silico Biol. 9 (1-2) (2009)
Oruganty Krishnadev, Narayanaswamy Srinivasan
A Data Integration Approach to Predict Host-Pathogen Protein-Protein Interactions: Application to Recognize Protein Interactions between Human and a Malarial Parasite. Silico Biol. 8 (3-4) (2008)
K. G. Tina, Rana Bhadra, Narayanaswamy Srinivasan
PIC: Protein Interactions Calculator. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Manoj Tyagi, P. Sharma, C. S. Swamy, F. Cadet, Narayanaswamy Srinivasan, Alexandre G. de Brevern, Bernard O. Offmann
Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
V. S. Gowri, Oruganty Krishnadev, C. S. Swamy, Narayanaswamy Srinivasan
MulPSSM: a database of multiple position-specific scoring matrices of protein domain families. Nucleic Acids Res. 34 (Database-Issue) (2006)
Rana Bhadra, Sankaran Sandhya, K. R. Abhinandan, Saikat Chakrabarti, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
Cascade PSI-BLAST web server: a remote homology search tool for relating protein domains. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Ganesan Pugalenthi, Khader Shameer, Narayanaswamy Srinivasan, Ramanathan Sowdhamini
HARMONY: a server for the assessment of protein structures. Nucleic Acids Res. 34 (Web-Server-Issue) (2006)
Oruganty Krishnadev, N. Rekha, Shashi B. Pandit, S. Abhiman, Smita Mohanty, L. S. Swapna, Swanand P. Gore, Narayanaswamy Srinivasan
PRODOC: a resource for the comparison of tethered protein domain architectures with in-built information on remotely related domain families. Nucleic Acids Res. 33 (Web-Server-Issue) (2005)
B. Anand, V. S. Gowri, Narayanaswamy Srinivasan
Use of multiple profiles corresponding to a sequence alignment enables effective detection of remote homologues. Bioinform. 21 (12) (2005)
Rana Bhadra, Narayanaswamy Srinivasan, Shashi B. Pandit
A New Domain Family in the Superfamily of Alkaline Phosphatases. Silico Biol. 5 (4) (2005)
A. Krupa, K. R. Abhinandan, Narayanaswamy Srinivasan
KinG: a database of protein kinases in genomes. Nucleic Acids Res. 32 (Database-Issue) (2004)
Shashi B. Pandit, Narayanaswamy Srinivasan
Identification and analysis of a new family of bacterial serine proteinases. Silico Biol. 4 (4) (2004)
Seema Namboori, Narayanaswamy Srinivasan, Shashi B. Pandit
Recognition of remotely related structural homologues using sequence profiles of aligned homologous protein structures. Silico Biol. 4 (4) (2004)
Shashi B. Pandit, Rana Bhadra, V. S. Gowri, S. Balaji, B. Anand, Narayanaswamy Srinivasan
SUPFAM: A database of sequence superfamilies of protein domains. BMC Bioinform. 5 (2004)
V. S. Gowri, Shashi B. Pandit, P. S. Karthik, Narayanaswamy Srinivasan, S. Balaji
Integration of related sequences with protein three-dimensional structural families in an updated version of PALI database. Nucleic Acids Res. 31 (1) (2003)
Shashi B. Pandit, Dilip Gosar, S. Abhiman, S. Sujatha, Sayali S. Dixit, Natasha S. Mhatre, Ramanathan Sowdhamini, Narayanaswamy Srinivasan
SUPFAM - a database of potential protein superfamily relationships derived by comparing sequence-based and structure-based families: implications for structural genomics and function annotation in genomes. Nucleic Acids Res. 30 (1) (2002)
S. Balaji, S. Sujatha, S. Sai Chetan Kumar, Narayanaswamy Srinivasan
PALI - a database of Phylogeny and ALIgnment of homologous protein structures. Nucleic Acids Res. 29 (1) (2001)
S. Sujatha, S. Balaji, Narayanaswamy Srinivasan
PALI: a database of alignments and phylogeny of homologous protein structures. Bioinform. 17 (4) (2001)