Konstantinos D. Tsirigos

Publication Activity (10 Years)

Years Active: 2008-2022
Publications (10 Years): 10

Top Topics

Protein Structure Prediction

Biological Sequence Analysis

Amino Acid Sequences

Top Venues

Nucleic Acids Res.

Database J. Biol. Databases Curation

J. Bioinform. Comput. Biol.

Publications

Federica Quaglia, Bálint Mészáros, Edoardo Salladini, András Hatos, Rita Pancsa, Lucía B. Chemes, Mátyás Pajkos, Tamas Lazar, Samuel Peña-Díaz, Jaime Santos, Veronika Ács, Nazanin Farahi, Erzsébet Fichó, Maria Cristina Aspromonte, Claudio Bassot, Anastasia Chasapi, Norman E. Davey, Radoslav Davidovic, Laszlo Dobson, Arne Elofsson, Gábor Erdös, Pascale Gaudet, Michelle G. Giglio, Juliana Glavina, Javier Iserte, Valentín Iglesias, Zsófia L. Kálmán, Matteo Lambrughi, Emanuela Leonardi, Sonia Longhi, Sandra Macedo-Ribeiro, Emiliano Maiani, Julia Marchetti, Cristina Marino Buslje, Attila Meszaros, Alexander Miguel Monzon, Giovanni Minervini, Suvarna Nadendla, Juliet F. Nilsson, Marián Novotný, Christos A. Ouzounis, Nicolas Palopoli, Elena Papaleo, Pedro J. Barbosa Pereira, Gabriele Pozzati, Vasilis J. Promponas, Jordi Pujols, Alma Carolina Sanchez Rocha, Martin Salas, Luciana Rodriguez Sawicki, Éva Schád, Aditi Shenoy, Tamás Szaniszló, Konstantinos D. Tsirigos, Nevena Veljkovic, Gustavo D. Parisi, Salvador Ventura, Zsuzsanna Dosztányi, Peter Tompa, Silvio C. E. Tosatto, Damiano Piovesan
DisProt in 2022: improved quality and accessibility of protein intrinsic disorder annotation. Nucleic Acids Res. 50 (D1) (2022)
Ahmed F. Roumia, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins. Frontiers Bioinform. 1 (2021)
Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Pantelis G. Bagos
Semi-supervised learning of Hidden Markov Models for biological sequence analysis. Bioinform. 35 (13) (2019)
Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Georgios N. Tsaousis, Dimitra Sarantopoulou, Zoi I. Litou, Pantelis G. Bagos
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis. Bioinform. 35 (24) (2019)
Ioannis A. Tamposis, Margarita C. Theodoropoulou, Konstantinos D. Tsirigos, Pantelis G. Bagos
Extending hidden Markov models to allow conditioning on previous observations. J. Bioinform. Comput. Biol. 16 (5) (2018)
Damiano Piovesan, Francesco Tabaro, Ivan Micetic, Marco Necci, Federica Quaglia, Christopher J. Oldfield, Maria Cristina Aspromonte, Norman E. Davey, Radoslav Davidovic, Zsuzsanna Dosztányi, Arne Elofsson, Alessandra Gasparini, András Hatos, Andrey V. Kajava, Lajos Kalmár, Emanuela Leonardi, Tamas Lazar, Sandra Macedo-Ribeiro, Mauricio Macossay-Castillo, Attila Meszaros, Giovanni Minervini, Nikoletta Murvai, Jordi Pujols, Daniel B. Roche, Edoardo Salladini, Éva Schád, Antoine Schramm, Beáta Szabó, Ágnes Tantos, Fiorella Tonello, Konstantinos D. Tsirigos, Nevena Veljkovic, Salvador Ventura, Wim F. Vranken, Per Warholm, Vladimir N. Uversky, A. Keith Dunker, Sonia Longhi, Peter Tompa, Silvio C. E. Tosatto
DisProt 7.0: a major update of the database of disordered proteins. Nucleic Acids Res. 45 (Database-Issue) (2017)
Niki L. Dimou, Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos
GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinform. 33 (10) (2017)
Christoph Peters, Konstantinos D. Tsirigos, Nanjiang Shu, Arne Elofsson
Improved topology prediction using the terminal hydrophobic helices rule. Bioinform. 32 (8) (2016)
Sikander Hayat, Christoph Peters, Nanjiang Shu, Konstantinos D. Tsirigos, Arne Elofsson
Inclusion of dyad-repeat pattern improves topology prediction of transmembrane β-barrel proteins. Bioinform. 32 (10) (2016)
Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinform. 32 (17) (2016)
Konstantinos D. Tsirigos, Christoph Peters, Nanjiang Shu, Lukas Käll, Arne Elofsson
The TOPCONS web server for consensus prediction of membrane protein topology and signal peptides. Nucleic Acids Res. 43 (Webserver-Issue) (2015)
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015)
Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. SETN (2012)
Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Res. 39 (Database-Issue) (2011)
Pantelis G. Bagos, Elisanthi P. Nikolaou, Theodore D. Liakopoulos, Konstantinos D. Tsirigos
Combined prediction of Tat and Sec signal peptides with hidden Markov models. Bioinform. 26 (22) (2010)
Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. Bioinform. 26 (19) (2010)
Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. J. Bioinform. Comput. Biol. 6 (2) (2008)