Pantelis G. Bagos

Publication Activity (10 Years)

Years Active: 2004-2023
Publications (10 Years): 12

Top Topics

Joint Distribution

Computational Biology

Amino Acid Sequences

Top Venues

Netw. Model. Anal. Health Informatics Bioinform.

Database J. Biol. Databases Curation

Comput. Biol. Medicine

Publications

Evangelos Karatzas, Fotis A. Baltoumas, Eleni Aplakidou, Panagiota I. Kontou, Panos Stathopoulos, Leonidas Stefanis, Pantelis G. Bagos, Georgios A. Pavlopoulos
Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources. Bioinform. 39 (8) (2023)
Evangelos Karatzas, Maria Gkonta, Joana Hotova, Fotis A. Baltoumas, Panagiota I. Kontou, Christopher J. Bobotsis, Pantelis G. Bagos, Georgios A. Pavlopoulos
VICTOR: A visual analytics web application for comparing cluster sets. Comput. Biol. Medicine 135 (2021)
Ahmed F. Roumia, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Ioannis A. Tamposis, Stavros J. Hamodrakas, Pantelis G. Bagos
OMPdb: A Global Hub of Beta-Barrel Outer Membrane Proteins. Frontiers Bioinform. 1 (2021)
Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos
The human GPCR signal transduction network. Netw. Model. Anal. Health Informatics Bioinform. 10 (1) (2021)
Diego A. Forero, Sandra Lopez-Leon, Yeimy González-Giraldo, Pantelis G. Bagos
Ten simple rules for carrying out and writing meta-analyses. PLoS Comput. Biol. 15 (5) (2019)
Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Pantelis G. Bagos
Semi-supervised learning of Hidden Markov Models for biological sequence analysis. Bioinform. 35 (13) (2019)
Ioannis A. Tamposis, Konstantinos D. Tsirigos, Margarita C. Theodoropoulou, Panagiota I. Kontou, Georgios N. Tsaousis, Dimitra Sarantopoulou, Zoi I. Litou, Pantelis G. Bagos
JUCHMME: a Java Utility for Class Hidden Markov Models and Extensions for biological sequence analysis. Bioinform. 35 (24) (2019)
Artemis G. Hatzigeorgiou, Pantelis G. Bagos, Panayiotis V. Benos, Christoforos Nikolaou, Yves Moreau, Ioannis Kavakiotis
ECCB 2018: The 17th European Conference on Computational Biology. Bioinform. 34 (17) (2018)
Ioannis A. Tamposis, Margarita C. Theodoropoulou, Konstantinos D. Tsirigos, Pantelis G. Bagos
Extending hidden Markov models to allow conditioning on previous observations. J. Bioinform. Comput. Biol. 16 (5) (2018)
Sotirios Bersimis, Athanasios Sachlas, Pantelis G. Bagos
Discriminating membrane proteins using the joint distribution of length sums of success and failure runs. Stat. Methods Appl. 26 (2) (2017)
Niki L. Dimou, Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos
GWAR: robust analysis and meta-analysis of genome-wide association studies. Bioinform. 33 (10) (2017)
Konstantinos D. Tsirigos, Arne Elofsson, Pantelis G. Bagos
PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins. Bioinform. 32 (17) (2016)
Patricia C. Babbitt, Pantelis G. Bagos, Amos Bairoch, Alex Bateman, Arnaud Chatonnet, Mark Jinan Chen, David J. Craik, Robert D. Finn, David E. Gloriam, Daniel H. Haft, Bernard Henrissat, Gemma L. Holliday, Vignir Ísberg, Quentin Kaas, David Landsman, Nicolas Lenfant, Gerard Manning, Nozomi Nagano, Narayanaswamy Srinivasan, Claire O'Donovan, Kim D. Pruitt, Ramanathan Sowdhamini, Neil D. Rawlings, Milton H. Saier Jr., Joanna L. Sharman, Michael Spedding, Konstantinos D. Tsirigos, Åke Västermark, Gerrit Vriend
Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat. Database J. Biol. Databases Curation 2015 (2015)
Danai K. Fimereli, Konstantinos D. Tsirigos, Zoi I. Litou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
CW-PRED: A HMM-Based Method for the Classification of Cell Wall-Anchored Proteins of Gram-Positive Bacteria. SETN (2012)
Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos
Using graph theory to analyze biological networks. BioData Min. 4 (2011)
Konstantinos D. Tsirigos, Pantelis G. Bagos, Stavros J. Hamodrakas
OMPdb: a database of β-barrel outer membrane proteins from Gram-negative bacteria. Nucleic Acids Res. 39 (Database-Issue) (2011)
Pantelis G. Bagos, Elisanthi P. Nikolaou, Theodore D. Liakopoulos, Konstantinos D. Tsirigos
Combined prediction of Tat and Sec signal peptides with hidden Markov models. Bioinform. 26 (22) (2010)
Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation 2010 (2010)
Georgios N. Tsaousis, Konstantinos D. Tsirigos, Xanthi D. Andrianou, Theodore D. Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
ExTopoDB: a database of experimentally derived topological models of transmembrane proteins. Bioinform. 26 (19) (2010)
Pantelis G. Bagos, Georgios N. Tsaousis, Stavros J. Hamodrakas
How Many 3D Structures Do We Need to Train a Predictor? Genom. Proteom. Bioinform. 7 (3) (2009)
Margarita C. Theodoropoulou, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
gpDB: a database of GPCRs, G-proteins, effectors and their interactions. Bioinform. 24 (12) (2008)
Zoi I. Litou, Pantelis G. Bagos, Konstantinos D. Tsirigos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
Prediction of Cell Wall Sorting Signals in Gram-Positive bacteria with a Hidden Markov Model: Application to Complete genomes. J. Bioinform. Comput. Biol. 6 (2) (2008)
Evangelia Petsalaki, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas
PredSL: A Tool for the N-terminal Sequence-based Prediction of Protein Subcellular Localization. Genom. Proteom. Bioinform. 4 (1) (2006)
Ioannis K. Valavanis, Pantelis G. Bagos, Ioannis Z. Emiris
beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties. Comput. Biol. Chem. 30 (6) (2006)
Pantelis G. Bagos, Theodore D. Liakopoulos, Stavros J. Hamodrakas
Algorithms for incorporating prior topological information in HMMs: application to transmembrane proteins. BMC Bioinform. 7 (2006)
Evangelia Petsalakis, Pantelis G. Bagos, Zoi I. Litou, Stavros J. Hamodrakas
N-terminal sequence-based prediction of subcellular location. BMC Bioinform. 6 (S-3) (2005)
Nikolaos G. Sgourakis, Pantelis G. Bagos, Stavros J. Hamodrakas
Prediction of the coupling specificity of GPCRs to four families of G-proteins using hidden Markov models and artificial neural networks. Bioinform. 21 (22) (2005)
Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas
Evaluation of methods for predicting the topology of beta-barrel outer membrane proteins and a consensus prediction method. BMC Bioinform. 6 (2005)
Nikolaos G. Sgourakis, Pantelis G. Bagos, Panagiotis K. Papasaikas, Stavros J. Hamodrakas
A method for the prediction of GPCRs coupling specificity to G-proteins using refined profile Hidden Markov Models. BMC Bioinform. 6 (2005)
Panagiotis K. Papasaikas, Pantelis G. Bagos, Zoi I. Litou, Vasilis J. Promponas, Stavros J. Hamodrakas
PRED-GPCR: GPCR recognition and family classification server. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Antigoni L. Elefsinioti, Pantelis G. Bagos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
A database for G proteins and their interaction with GPCRs. BMC Bioinform. 5 (2004)
Pantelis G. Bagos, Theodore Liakopoulos, Stavros J. Hamodrakas
Faster Gradient Descent Training of Hidden Markov Models, Using Individual Learning Rate Adaptation. ICGI (2004)
Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
PRED-TMBB: a web server for predicting the topology of ?barrel outer membrane proteins. Nucleic Acids Res. 32 (Web-Server-Issue) (2004)
Pantelis G. Bagos, Theodore Liakopoulos, Ioannis C. Spyropoulos, Stavros J. Hamodrakas
A Hidden Markov Model method, capable of predicting and discriminating beta-barrel outer membrane proteins. BMC Bioinform. 5 (2004)
Ioannis C. Spyropoulos, Theodore Liakopoulos, Pantelis G. Bagos, Stavros J. Hamodrakas
TMRPres2D: high quality visual representation of transmembrane protein models. Bioinform. 20 (17) (2004)