Georgios A. Pavlopoulos

ORCID

Publication Activity (10 Years)

Years Active: 2008-2023
Publications (10 Years): 15

Top Venues

Nucleic Acids Res.

Bioinform.

CoRR

Heidelberg University (PHD)

Education History

Heidelberg University

PHD

Publications

Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Extreme-scale many-against-many protein similarity search. CoRR (2023)
Evangelos Karatzas, Fotis A. Baltoumas, Eleni Aplakidou, Panagiota I. Kontou, Panos Stathopoulos, Leonidas Stefanis, Pantelis G. Bagos, Georgios A. Pavlopoulos
Flame (v2.0): advanced integration and interpretation of functional enrichment results from multiple sources. Bioinform. 39 (8) (2023)
Fotis A. Baltoumas, Evangelos Karatzas, David Páez-Espino, Nefeli K. Venetsianou, Eleni Aplakidou, Anastasis Oulas, Robert D. Finn, Sergey Ovchinnikov, Evangelos Pafilis, Nikos Kyrpides, Georgios A. Pavlopoulos
Exploring microbial functional biodiversity at the protein family level - From metagenomic sequence reads to annotated protein clusters. Frontiers Bioinform. 3 (2023)
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Extreme-Scale Many-against-Many Protein Similarity Search. SC (2022)
Mikaela Koutrouli, Evangelos Karatzas, Katerina Papanikolopoulou, Georgios A. Pavlopoulos
NORMA: The Network Makeup Artist - A Web Tool for Network Annotation Visualization. Genom. Proteom. Bioinform. 20 (3) (2022)
Evangelos Karatzas, Maria Gkonta, Joana Hotova, Fotis A. Baltoumas, Panagiota I. Kontou, Christopher J. Bobotsis, Pantelis G. Bagos, Georgios A. Pavlopoulos
VICTOR: A visual analytics web application for comparing cluster sets. Comput. Biol. Medicine 135 (2021)
Evangelos Karatzas, Fotis A. Baltoumas, Nikolaos A. Panayiotou, Reinhard Schneider, Georgios A. Pavlopoulos
Arena3Dweb: interactive 3D visualization of multilayered networks. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Panagiota I. Kontou, Athanasia Pavlopoulou, Niki L. Dimou, Margarita C. Theodoropoulou, Georgia Braliou, Georgios N. Tsaousis, Georgios A. Pavlopoulos, Stavros J. Hamodrakas, Pantelis G. Bagos
The human GPCR signal transduction network. Netw. Model. Anal. Health Informatics Bioinform. 10 (1) (2021)
Evangelos Theodorakis, Andreas N. Antonakis, Ismini Baltsavia, Georgios A. Pavlopoulos, Martina Samiotaki, Grigoris D. Amoutzias, Theodosios Theodosiou, Oreste Acuto, Georgios Efstathiou, Ioannis Iliopoulos
ProteoSign v2: a faster and evolved user-friendly online tool for statistical analyses of differential proteomics. Nucleic Acids Res. 49 (Webserver-Issue) (2021)
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
Distributed many-to-many protein sequence alignment using sparse matrices. SC (2020)
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices. CoRR (2020)
Georgios A. Pavlopoulos, A. David Páez-Espino, Nikos Kyrpides, Ioannis Iliopoulos
Empirical Comparison of Visualization Tools for Larger-Scale Network Analysis. Adv. Bioinformatics 2017 (2017)
A. David Páez-Espino, I-Min A. Chen, Krishna Palaniappan, Anna Ratner, Ken Chu, Ernest Szeto, Manoj Pillay, Jinghua Huang, Victor M. Markowitz, Torben Nielsen, Marcel Huntemann, T. B. K. Reddy, Georgios A. Pavlopoulos, Matthew B. Sullivan, Barbara J. Campbell, Feng Chen, Katherine D. McMahon, Steven J. Hallam, Vincent J. Denef, Ricardo Cavicchioli, Sean M. Caffrey, Wolfgang R. Streit, John Webster, Kim M. Handley, Ghasem H. Salekdeh, Nicolas Tsesmetzis, João C. Setubal, Phillip B. Pope, Wen-Tso Liu, Adam R. Rivers, Natalia Ivanova, Nikos Kyrpides
IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses. Nucleic Acids Res. 45 (Database-Issue) (2017)
Georgios Efstathiou, Andreas N. Antonakis, Georgios A. Pavlopoulos, Theodosios Theodosiou, Peter Divanach, David C. Trudgian, Benjamin Thomas, Nikolas Papanikolaou, Michalis Aivaliotis, Oreste Acuto, Ioannis Iliopoulos
ProteoSign: an end-user online differential proteomics statistical analysis platform. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Theodosios Theodosiou, Ioannis S. Vizirianakis, Ioannis Iliopoulos
DrugQuest - a text mining workflow for drug association discovery. BMC Bioinform. 17 (S-5) (2016)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery. Bioinform. 31 (6) (2015)
Nikolas Papanikolaou, Georgios A. Pavlopoulos, Evangelos Pafilis, Theodosios Theodosiou, Reinhard Schneider, Venkata P. Satagopam, Christos A. Ouzounis, Aristides G. Eliopoulos, Vasilis J. Promponas, Ioannis Iliopoulos
: a knowledge integration platform for literature mining and concept discovery. Bioinform. 30 (22) (2014)
Evangelos Pafilis, Georgios A. Pavlopoulos, Venkata P. Satagopam, Nikolas Papanikolaou, Heiko Horn, Christos Arvanitidis, Lars Juhl Jensen, Reinhard Schneider, Ioannis Iliopoulos
OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction. BIBE (2013)
Georgios A. Pavlopoulos, Anastasis Oulas, Ernesto Iacucci, Alejandro Sifrim, Yves Moreau, Reinhard Schneider, Jan Aerts, Ioannis Iliopoulos
Unraveling genomic variation from next generation sequencing data. BioData Min. 6 (2013)
Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
A bioinformatics e-dating story: computational prediction and prioritization of receptor-ligand pairs. BMC Bioinform. 13 (S-18) (2012)
Dusan Popovic, Alejandro Sifrim, Georgios A. Pavlopoulos, Yves Moreau, Bart De Moor
A Simple Genetic Algorithm for Biomarker Mining. PRIB (2012)
Thomas Boogaerts, Léon-Charles Tranchevent, Georgios A. Pavlopoulos, Jan Aerts, Joos Vandewalle
Visualizing high dimensional datasets using parallel coordinates: Application to gene prioritization. BIBE (2012)
Theodoros G. Soldatos, Georgios A. Pavlopoulos
Mining Cell Cycle Literature Using Support Vector Machines. SETN (2012)
Theodoros G. Soldatos, Seán I. O'Donoghue, Venkata P. Satagopam, Adriano Barbosa-Silva, Georgios A. Pavlopoulos, Ana Carolina Wanderley-Nogueira, Nina da Mota Soares-Cavalcanti, Reinhard Schneider
Caipirini: using gene sets to rank literature. BioData Min. 5 (2012)
Maria Secrier, Georgios A. Pavlopoulos, Jan Aerts, Reinhard Schneider
Arena3D: visualizing time-driven phenotypic differences in biological systems. BMC Bioinform. 13 (2012)
Ernesto Iacucci, Dusan Popovic, Georgios A. Pavlopoulos, Léon-Charles Tranchevent, Marijke Bauters, Bart De Moor, Yves Moreau
Towards Better Prioritization of Epigenetically Modified DNA Regions. SETN (2012)
Ernesto Iacucci, Léon-Charles Tranchevent, Dusan Popovic, Georgios A. Pavlopoulos, Bart De Moor, Reinhard Schneider, Yves Moreau
ReLiance: a machine learning and literature-based prioritization of receptor - ligand pairings. Bioinform. 28 (18) (2012)
Georgios A. Pavlopoulos, Maria Secrier, Charalampos N. Moschopoulos, Theodoros G. Soldatos, Sophia Kossida, Jan Aerts, Reinhard Schneider, Pantelis G. Bagos
Using graph theory to analyze biological networks. BioData Min. 4 (2011)
Venkata P. Satagopam, Margarita C. Theodoropoulou, Christos K. Stampolakis, Georgios A. Pavlopoulos, Nikolaos Papandreou, Pantelis G. Bagos, Reinhard Schneider, Stavros J. Hamodrakas
GPCRs, G-proteins, effectors and their interactions: human-gpDB, a database employing visualization tools and data integration techniques. Database J. Biol. Databases Curation 2010 (2010)
Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Reinhard Schneider, José Miguel Ortega
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinform. 11 (2010)
Georgios A. Pavlopoulos, Theodoros G. Soldatos, Adriano Barbosa-Silva, Reinhard Schneider
A reference guide for tree analysis and visualization. BioData Min. 3 (2010)
Georgios A. Pavlopoulos, Charalampos N. Moschopoulos, Sean D. Hooper, Reinhard Schneider, Sophia Kossida
jClust: a clustering and visualization toolbox. Bioinform. 25 (15) (2009)
Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Reinhard Schneider, Spiridon D. Likothanassis, Sophia Kossida
GIBA: a clustering tool for detecting protein complexes. BMC Bioinform. 10 (S-6) (2009)
Georgios A. Pavlopoulos, Evangelos Pafilis, Michael Kuhn, Sean D. Hooper, Reinhard Schneider
OnTheFly: a tool for automated document-based text annotation, data linking and network generation. Bioinform. 25 (7) (2009)
Georgios A. Pavlopoulos, Seán I. O'Donoghue, Venkata P. Satagopam, Theodoros G. Soldatos, Evangelos Pafilis, Reinhard Schneider
Arena3D: visualization of biological networks in 3D. BMC Syst. Biol. 2 (2008)
Charalampos N. Moschopoulos, Georgios A. Pavlopoulos, Spiridon D. Likothanassis, Sofia Kossida
An enhanced Markov clustering method for detecting protein complexes. BIBE (2008)
Georgios A. Pavlopoulos, Anna-Lynn Wegener, Reinhard Schneider
A survey of visualization tools for biological network analysis. BioData Min. 1 (2008)

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Publication Activity (10 Years)

Top Topics

Top Venues

Georgios A. Pavlopoulos