Extreme-scale many-against-many protein similarity search.
Oguz SelvitopiSaliya EkanayakeGiulia GuidiMuaaz G. AwanGeorgios A. PavlopoulosAriful AzadNikos KyrpidesLeonid OlikerKatherine A. YelickAydin BuluçPublished in: CoRR (2023)
Keyphrases
- similarity search
- mass spectra
- distance function
- sequence databases
- metric space
- similarity measure
- high dimensional
- similarity searching
- high dimensional data
- indexing techniques
- multimedia databases
- r tree
- similarity retrieval
- query processing
- cross view
- similarity queries
- protein sequences
- efficient similarity search
- indexing structure
- nearest neighbor search
- amino acids
- locality sensitive hashing
- approximate similarity search
- knn
- hash functions
- efficient indexing
- binary codes
- dynamic time warping
- image processing
- biological sequences
- neural network
- multi dimensional
- machine learning