Oguz Selvitopi

Publication Activity (10 Years)

Years Active: 2018-2024
Publications (10 Years): 30

Top Topics

Parallel Algorithm

Distributed Memory

Top Venues

Publications

Nan Ding, Pieter Maris, Hai Ah Nam, Taylor L. Groves, Muaaz Gul Awan, LeAnn Lindsey, Christopher S. Daley, Oguz Selvitopi, Leonid Oliker, Nicholas J. Wright, Samuel Williams
Evaluating the potential of disaggregated memory systems for HPC applications. Concurr. Comput. Pract. Exp. 36 (19) (2024)
Ujjaini Mukhopadhyay, Alok Tripathy, Oguz Selvitopi, Katherine A. Yelick, Aydin Buluç
Sparsity-Aware Communication for Distributed Graph Neural Network Training. ICPP (2024)
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Extreme-scale many-against-many protein similarity search. CoRR (2023)
Nan Ding, Pieter Maris, Hai Ah Nam, Taylor L. Groves, Muaaz Gul Awan, LeAnn Lindsey, Christopher S. Daley, Oguz Selvitopi, Leonid Oliker, Nicholas J. Wright
Evaluating the Potential of Disaggregated Memory Systems for HPC applications. CoRR (2023)
Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Buluç
Parallel Algorithms for Masked Sparse Matrix-Matrix Products. ICPP (2022)
Ariful Azad, Oguz Selvitopi, Md Taufique Hussain, John R. Gilbert, Aydin Buluç
Combinatorial BLAS 2.0: Scaling Combinatorial Algorithms on Distributed-Memory Systems. IEEE Trans. Parallel Distributed Syst. 33 (4) (2022)
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Extreme-Scale Many-against-Many Protein Similarity Search. SC (2022)
Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Buluç
Parallel algorithms for masked sparse matrix-matrix products. PPoPP (2022)
Nazanin Jafari, Oguz Selvitopi, Cevdet Aykanat
Fast shared-memory streaming multilevel graph partitioning. J. Parallel Distributed Comput. 147 (2021)
Md Taufique Hussain, Oguz Selvitopi, Aydin Buluç, Ariful Azad
Communication-Avoiding and Memory-Constrained Sparse Matrix-Matrix Multiplication at Extreme Scale. IPDPS (2021)
Seher Acer, Ariful Azad, Erik G. Boman, Aydin Buluç, Karen D. Devine, S. M. Ferdous, Nitin Gawande, Sayan Ghosh, Mahantesh Halappanavar, Ananth Kalyanaraman, Arif Khan, Marco Minutoli, Alex Pothen, Sivasankaran Rajamanickam, Oguz Selvitopi, Nathan R. Tallent, Antonino Tumeo
EXAGRAPH: Graph and combinatorial methods for enabling exascale applications. Int. J. High Perform. Comput. Appl. 35 (6) (2021)
Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. IPDPS (2021)
Srdan Milakovic, Oguz Selvitopi, Israt Nisa, Zoran Budimlic, Aydin Buluç
Parallel Algorithms for Masked Sparse Matrix-Matrix Products. CoRR (2021)
Oguz Selvitopi, Benjamin Brock, Israt Nisa, Alok Tripathy, Katherine A. Yelick, Aydin Buluç
Distributed-memory parallel algorithms for sparse times tall-skinny-dense matrix multiplication. ICS (2021)
Ariful Azad, Oguz Selvitopi, Md Taufique Hussain, John R. Gilbert, Aydin Buluç
Combinatorial BLAS 2.0: Scaling combinatorial algorithms on distributed-memory systems. CoRR (2021)
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
Distributed many-to-many protein sequence alignment using sparse matrices. SC (2020)
Muaaz G. Awan, Jack Deslippe, Aydin Buluç, Oguz Selvitopi, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
ADEPT: a domain independent sequence alignment strategy for gpu architectures. BMC Bioinform. 21 (1) (2020)
Oguz Selvitopi, Md Taufique Hussain, Ariful Azad, Aydin Buluç
Optimizing High Performance Markov Clustering for Pre-Exascale Architectures. CoRR (2020)
Yu-Hang Tang, Oguz Selvitopi, Doru-Thom Popovici, Aydin Buluç
A High-Throughput Solver for Marginalized Graph Kernels on GPU. IPDPS (2020)
Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. CoRR (2020)
Md Taufique Hussain, Oguz Selvitopi, Aydin Buluç, Ariful Azad
Communication-Avoiding and Memory-Constrained Sparse Matrix-Matrix Multiplication at Extreme Scale. CoRR (2020)
Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
The Parallelism Motifs of Genomic Data Analysis. CoRR (2020)
Benjamin Brock, Aydin Buluç, Timothy G. Mattson, Scott McMillan, José E. Moreira, Roger Pearce, Oguz Selvitopi, Trevor Steil
Considerations for a Distributed GraphBLAS API. IPDPS Workshops (2020)
Oguz Selvitopi, Md Taufique Hussain, Ariful Azad, Aydin Buluç
Optimizing High Performance Markov Clustering for Pre-Exascale Architectures. IPDPS (2020)
Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Georgios A. Pavlopoulos, Ariful Azad, Aydin Buluç
Distributed Many-to-Many Protein Sequence Alignment using Sparse Matrices. CoRR (2020)
Yu-Hang Tang, Oguz Selvitopi, Doru Popovici, Aydin Buluç
A High-Throughput Solver for Marginalized Graph Kernels on GPU. CoRR (2019)
Oguz Selvitopi, Cevdet Aykanat
Regularizing irregularly sparse point-to-point communications. SC (2019)
Oguz Selvitopi, Gunduz Vehbi Demirci, Ata Turk, Cevdet Aykanat
Locality-aware and load-balanced static task scheduling for MapReduce. Future Gener. Comput. Syst. 90 (2019)
Seher Acer, Oguz Selvitopi, Cevdet Aykanat
Optimizing nonzero-based sparse matrix partitioning models via reducing latency. J. Parallel Distributed Comput. 122 (2018)
Kadir Akbudak, Oguz Selvitopi, Cevdet Aykanat
Partitioning Models for Scaling Parallel Sparse Matrix-Matrix Multiplication. ACM Trans. Parallel Comput. 4 (3) (2018)