Rob Egan

Publication Activity (10 Years)

Years Active: 2013-2023
Publications (10 Years): 11

Top Topics

Quality Improvement

Genomic Sequences

Sequence Alignment

Genotype Phenotype

Top Venues

Publications

Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
Designing Efficient SIMD Kernels for High Performance Sequence Alignment. IPDPS Workshops (2023)
Jingchao Sun, Zhining Qiu, Rob Egan, Harrison Ho, Yue Li, Zhong Wang
Persistent memory as an effective alternative to random access memory in metagenome assembly. BMC Bioinform. 23 (1) (2022)
Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick
metagenome assembly using GPUs. SC (2021)
Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
The Parallelism Motifs of Genomic Data Analysis. CoRR (2020)
Nathan LaPierre, Rob Egan, Wei Wang, Zhong Wang
De novo Nanopore read quality improvement using deep learning. BMC Bioinform. 20 (1) (2019)
Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
Extreme scale de novo metagenome assembly. SC (2018)
Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
Extreme Scale De Novo Metagenome Assembly. CoRR (2018)
Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. Euro-Par (2017)
Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
Extreme-Scale De Novo Genome Assembly. CoRR (2017)
Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
MerBench: PGAS Benchmarks for High Performance Genome Assembly. PAW@SC (2017)
Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
HipMer: an extreme-scale de novo genome assembler. SC (2015)
Taghrid Samak, Rob Egan, Brian Bushnell, Daniel K. Gunter, Alex Copeland, Zhong Wang
Automatic Outlier Detection for Genome Assembly Quality Assessment. e-Science (2013)
Scott C. Clark, Rob Egan, Peter I. Frazier, Zhong Wang
ALE: a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies. Bioinform. 29 (4) (2013)