Steven A. Hofmeyr

Publication Activity (10 Years)

Years Active: 1996-2023
Publications (10 Years): 30

Top Topics

Hepatitis C Virus

Resource Scheduling

Sequence Alignment

Top Venues

IPDPS Workshops

Publications

Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey
High-Performance Filters for GPUs. PPoPP (2023)
Doru-Thom Popovici, Muaaz Gul Awan, Giulia Guidi, Rob Egan, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
Designing Efficient SIMD Kernels for High Performance Sequence Alignment. IPDPS Workshops (2023)
Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey
-mer Analysis. ACDA (2023)
Hunter McCoy, Steven A. Hofmeyr, Katherine A. Yelick, Prashant Pandey
High-Performance Filters For GPUs. CoRR (2022)
Jhe-Yu Liou, Muaaz Awan, Steven A. Hofmeyr, Stephanie Forrest, Carole-Jean Wu
Understanding the Power of Evolutionary Computation for GPU Code Optimization. IISWC (2022)
Jhe-Yu Liou, Muaaz Awan, Steven A. Hofmeyr, Stephanie Forrest, Carole-Jean Wu
Understanding the Power of Evolutionary Computation for GPU Code Optimization. CoRR (2022)
Melanie E. Moses, Steven A. Hofmeyr, Judy L. Cannon, Akil Andrews, Rebekah Gridley, Monica Hinga, Kirtus G. Leyba, Abigail Pribisova, Vanessa Surjadidjaja, Humayra Tasnim, Stephanie Forrest
Spatially distributed infection increases viral load in a computational model of SARS-CoV-2 lung infection. PLoS Comput. Biol. 17 (12) (2021)
Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick
metagenome assembly using GPUs. SC (2021)
Muaaz G. Awan, Jack Deslippe, Aydin Buluç, Oguz Selvitopi, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick
ADEPT: a domain independent sequence alignment strategy for gpu architectures. BMC Bioinform. 21 (1) (2020)
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. CoRR (2020)
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. IPDPS (2020)
Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
The Parallelism Motifs of Genomic Data Analysis. CoRR (2020)
Francesco Peverelli, Lorenzo Di Tucci, Marco D. Santambrogio, Nan Ding, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
GPU accelerated partial order multiple sequence alignment for long reads self-correction. IPDPS Workshops (2020)
John Bachan, Scott B. Baden, Steven A. Hofmeyr, Mathias Jacquelin, Amir Kamil, Dan Bonachea, Paul H. Hargrove, Hadia Ahmed
UPC++: A High-Performance Communication Framework for Asynchronous Computation. IPDPS (2019)
Lorenzo Di Tucci, Davide Conficconi, Alessandro Comodi, Steven A. Hofmeyr, David Donofrio, Marco D. Santambrogio
A Parallel, Energy Efficient Hardware Architecture for the merAligner on FPGA Using Chisel HCL. IPDPS Workshops (2018)
Matteo Ferroni, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio
Enabling power-awareness for the Xen hypervisor. SIGBED Rev. 15 (1) (2018)
Connor Imes, Steven A. Hofmeyr, Henry Hoffmann
Energy-efficient Application Resource Scheduling using Machine Learning Classifiers. ICPP (2018)
Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
Extreme scale de novo metagenome assembly. SC (2018)
Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
Extreme Scale De Novo Metagenome Assembly. CoRR (2018)
Matteo Ferroni, Andrea Corna, Andrea Damiani, Rolando Brondolin, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio
Power Consumption Models for Multi-Tenant Server Infrastructures. ACM Trans. Archit. Code Optim. 14 (4) (2017)
Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. Euro-Par (2017)
Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
Extreme-Scale De Novo Genome Assembly. CoRR (2017)
John Bachan, Dan Bonachea, Paul Hargrove, Steven A. Hofmeyr, Mathias Jacquelin, Amir Kamil, Brian van Straalen, Scott B. Baden
The UPC++ PGAS library for Exascale Computing. PAW@SC (2017)
Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
MerBench: PGAS Benchmarks for High Performance Genome Assembly. PAW@SC (2017)
Matteo Ferroni, Juan A. Colmenares, Steven A. Hofmeyr, John Kubiatowicz, Marco D. Santambrogio
Enabling Power-Awareness for the Xen Hypervisor. EWiLi (2016)
Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest
Hype and heavy tails: A closer look at data breaches. J. Cybersecur. 2 (1) (2016)
Steven A. Hofmeyr, Costin Iancu, Juan A. Colmenares, Eric Roman, Brian Austin
Time-Sharing Redux for Large-Scale HPC Systems. HPCC/SmartCity/DSS (2016)
Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest, Michel van Eeten
Analyzing and Modeling Longitudinal Security Data: Promise and Pitfalls. ACSAC (2015)
Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick
HipMer: an extreme-scale de novo genome assembler. SC (2015)
Benjamin Edwards, Steven A. Hofmeyr, Stephanie Forrest
Hype and Heavy Tails: A Closer Look at Data Breaches. WEIS (2015)
Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu
The Case for Partitioning Virtual Machines on Multicore Architectures. IEEE Trans. Parallel Distributed Syst. 25 (10) (2014)
Steven A. Hofmeyr, Juan A. Colmenares, Costin Iancu, John Kubiatowicz
Juggle: addressing extrinsic load imbalances in SPMD applications on multicore computers. Clust. Comput. 16 (2) (2013)
Juan A. Colmenares, Gage Eads, Steven A. Hofmeyr, Sarah Bird, Miquel Moretó, David Chou, Brian Gluzman, Eric Roman, Davide B. Bartolini, Nitesh Mor, Krste Asanovic, John Kubiatowicz
Tessellation: refactoring the OS around explicit resource containers with continuous adaptation. DAC (2013)
Benjamin Edwards, Steven A. Hofmeyr, George Stelle, Stephanie Forrest
Internet Topology over Time CoRR (2012)
Steven A. Hofmeyr, Tyler Moore, Stephanie Forrest, Benjamin Edwards, George Stelle
Modeling Internet-Scale Policies for Cleaning up Malware CoRR (2012)
Benjamin Edwards, Tyler Moore, George Stelle, Steven A. Hofmeyr, Stephanie Forrest
Beyond the blacklist: modeling malware spread and the effect of interventions. NSPW (2012)
Benjamin Edwards, Tyler Moore, George Stelle, Steven A. Hofmeyr, Stephanie Forrest
Beyond the Blacklist: Modeling Malware Spread and the Effect of Interventions CoRR (2012)
Steven A. Hofmeyr, Tyler Moore, Stephanie Forrest, Benjamin Edwards, George Stelle
Modeling Internet-Scale Policies for Cleaning up Malware. WEIS (2011)
Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu, Eric Roman
Optimized pre-copy live migration for memory intensive applications. SC (2011)
Steven A. Hofmeyr, Tyler Moore, Stephanie Forrest, Benjamin Edwards, George Stelle
Modeling Internet-Scale Policies for Cleaning up Malware. WEIS (Springer Volume) (2011)
Steven A. Hofmeyr, Juan A. Colmenares, Costin Iancu, John Kubiatowicz
Juggle: proactive load balancing on multicore computers. HPDC (2011)
Juan A. Colmenares, Sarah Bird, Gage Eads, Steven A. Hofmeyr, Albert Kim, Rohit Poddar, Hilfi Alkaff, Krste Asanovic, John Kubiatowicz
Tessellation operating system: Building a real-time, responsive, high-throughput client OS for many-core architectures. Hot Chips Symposium (2011)
Khaled Z. Ibrahim, Steven A. Hofmeyr, Costin Iancu
Characterizing the Performance of Parallel Applications on Multi-socket Virtual Machines. CCGRID (2011)
Steven A. Hofmeyr, Costin Iancu, Filip Blagojevic
Load balancing on speed. PPOPP (2010)
Costin Iancu, Steven A. Hofmeyr, Filip Blagojevic, Yili Zheng
Oversubscription on multicore processors. IPDPS (2010)
Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji
The Evolution of System-Call Monitoring. ACSAC (2008)
Costin Iancu, Steven A. Hofmeyr
Runtime optimization of vector operations on large scale SMP clusters. PACT (2008)
Steven A. Hofmeyr
Host intrusion prevention: Part of the operating system or on top of the operating system? Comput. Secur. 24 (6) (2005)
Steven A. Hofmeyr
The implications of immunology for secure systems design. Comput. Secur. 23 (6) (2004)
Steven A. Hofmeyr
A New Approach to Security: Learning from Immunology. Inf. Secur. J. A Glob. Perspect. 12 (4) (2003)
Steven A. Hofmeyr
Why Today's Security Technologies Are So Inadequate: History, Implications, and New Approaches. Inf. Secur. J. A Glob. Perspect. 12 (1) (2003)
Steven A. Hofmeyr, Stephanie Forrest
Architecture for an Artificial Immune System. Evol. Comput. 8 (4) (2000)
Steven A. Hofmeyr, Stephanie Forrest, Anil Somayaji
Intrusion Detection Using Sequences of System Calls. J. Comput. Secur. 6 (3) (1998)
Andrew P. Kosoresow, Steven A. Hofmeyr
Intrusion Detection via System Call Traces. IEEE Softw. 14 (5) (1997)
Anil Somayaji, Steven A. Hofmeyr, Stephanie Forrest
Principles of a computer immune system. NSPW (1997)
Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji
Computer Immunology. Commun. ACM 40 (10) (1997)
Stephanie Forrest, Steven A. Hofmeyr, Anil Somayaji, Thomas A. Longstaff
A Sense of Self for Unix Processes. IEEE Symposium on Security and Privacy (1996)