Marquita Ellis

Publication Activity (10 Years)

Years Active: 2017-2023
Publications (10 Years): 16

Top Topics

Graph Based Semi Supervised Learning

Graph Construction

Cloud Computing

Top Venues

Publications

Tingkai Liu, Marquita Ellis, Carlos H. A. Costa, Claudia Misale, Sara Kokkila Schumacher, Jinwook Jung, Gi-Joon Nam, Volodymyr V. Kindratenko
Cloud-Bursting and Autoscaling for Python-Native Scientific Workflows Using Ray. ISC Workshops (2023)
Marquita Ellis, Aydin Buluç, Katherine A. Yelick
Asynchrony versus bulk-synchrony for a generalized N-body problem from genomics. PPoPP (2021)
Israt Nisa, Prashant Pandey, Marquita Ellis, Leonid Oliker, Aydin Buluç, Katherine A. Yelick
Distributed-Memory k-mer Counting on GPUs. IPDPS (2021)
Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. IPDPS (2021)
Marquita Ellis, Aydin Buluç, Katherine A. Yelick
Scaling Generalized N-Body Problems, A Case Study from Genomics. ICPP (2021)
Giulia Guidi, Marquita Ellis, Daniel Rokhsar, Katherine A. Yelick, Aydin Buluç
BELLA: Berkeley Efficient Long-Read to Long-Read Aligner and Overlapper. ACDA (2021)
Giulia Guidi, Marquita Ellis, Aydin Buluç, Katherine A. Yelick, David E. Culler
10 Years Later: Cloud Computing is Closing the Performance Gap. ICPE (Companion) (2021)
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. CoRR (2020)
Giulia Guidi, Marquita Ellis, Aydin Buluç, Katherine A. Yelick, David E. Culler
10 Years Later: Cloud Computing is Closing the Performance Gap. CoRR (2020)
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. IPDPS (2020)
Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. CoRR (2020)
Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker
The Parallelism Motifs of Genomic Data Analysis. CoRR (2020)
Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
diBELLA: Distributed Long Read to Long Read Alignment. CoRR (2020)
Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
diBELLA: Distributed Long Read to Long Read Alignment. ICPP (2019)
Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. Euro-Par (2017)
Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick
MerBench: PGAS Benchmarks for High Performance Genome Assembly. PAW@SC (2017)