Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly.
Giulia GuidiOguz SelvitopiMarquita EllisLeonid OlikerKatherine A. YelickAydin BuluçPublished in: IPDPS (2021)
Keyphrases
- graph construction
- human genome
- graph based semi supervised learning
- k nearest neighbor
- knn
- semi supervised learning
- semi supervised
- sequence data
- genomic sequences
- dimensionality reduction
- semi supervised classification
- spectral clustering
- neighborhood graph
- subspace learning
- data structure
- support vector machine
- dna sequences
- multi label
- nearest neighbor search
- unsupervised learning
- pairwise