Alberto Zeni

Publication Activity (10 Years)

Years Active: 2019-2024
Publications (10 Years): 14

Top Topics

Sequence Alignment

Reconfigurable Hardware

Genome Sequences

Top Venues

IPDPS Workshops

Publications

Alberto Zeni, Emanuele Del Sozzo, Eleonora D'Arnese, Davide Conficconi, Marco D. Santambrogio
Starlight: A kernel optimizer for GPU processing. J. Parallel Distributed Comput. 187 (2024)
Alberto Zeni, Guido Walter Di Donato, Alessia Della Valle, Filippo Carloni, Marco D. Santambrogio
On the Genome Sequence Alignment FPGA Acceleration via KSW2z. ISCAS (2023)
Giulia Gerometta, Alberto Zeni, Marco D. Santambrogio
TSUNAMI: A GPU Implementation of the WFA Algorithm. PACT (2023)
Alberto Zeni, Emanuele Del Sozzo, Beatrice Branchini, Lorenzo Di Tucci, Marco D. Santambrogio
New Solution For a (Scaff)Old Problem: an FPGA Approach. IPDPS Workshops (2023)
Emanuele Del Sozzo, Davide Conficconi, Alberto Zeni, Mirko Salaris, Donatella Sciuto, Marco D. Santambrogio
Pushing the Level of Abstraction of Digital System Design: A Survey on How to Program FPGAs. ACM Comput. Surv. 55 (5) (2023)
Beatrice Branchini, Giulia Gerometta, Luisa Cicolini, Alberto Zeni, Emanuele Del Sozzo, Marco D. Santambrogio
Surfing the Wavefront of Genome Alignment. ISCAS (2022)
Beatrice Branchini, Sofia Breschi, Alberto Zeni, Marco D. Santambrogio
Fast Genome Analysis Leveraging Exact String Matching. IPDPS Workshops (2022)
Alberto Zeni, Guido Walter Di Donato, Lorenzo Di Tucci, Marco Rabozzi, Marco D. Santambrogio
The Importance of Being X-Drop: High Performance Genome Alignment on Reconfigurable Hardware. FCCM (2021)
Alberto Zeni, Kenneth O'Brien, Michaela Blott, Marco D. Santambrogio
Optimized Implementation of the HPCG Benchmark on Reconfigurable Hardware. Euro-Par (2021)
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. CoRR (2020)
Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. IPDPS (2020)
Guido Walter Di Donato, Alberto Zeni, Lorenzo Di Tucci, Marco D. Santambrogio
Leveraging Succinct Data Structures for DNA Sequence Mapping on FPGA. IPDPS Workshops (2020)
Alberto Zeni, Matteo Crespi, Lorenzo Di Tucci, Marco D. Santambrogio
An FPGA-Based Computing Infrastructure Tailored to Efficiently Scaffold Genome Sequences. FCCM (2019)
Alberto Zeni, Francesco Peverelli, Enrico Cabri, Lorenzo Di Tucci, Luca Cerina, Marco D. Santambrogio
circFA: a FPGA-based circular RNA aligner. BHI (2019)