Leveraging Succinct Data Structures for DNA Sequence Mapping on FPGA.
Guido Walter Di DonatoAlberto ZeniLorenzo Di TucciMarco D. SantambrogioPublished in: IPDPS Workshops (2020)
Keyphrases
- dna sequences
- data structure
- dna computing
- human genome
- tandem repeats
- gene structure prediction
- hardware implementation
- high speed
- gene prediction
- sequence patterns
- coding regions
- dna sequencing
- binding sites
- field programmable gate array
- biological sequences
- genomic sequences
- regulatory elements
- motif discovery
- rna sequences
- index structure
- graphical models
- problems in computational biology
- low cost