GPU accelerated partial order multiple sequence alignment for long reads self-correction.
Francesco PeverelliLorenzo Di TucciMarco D. SantambrogioNan DingSteven A. HofmeyrAydin BuluçLeonid OlikerKatherine A. YelickPublished in: IPDPS Workshops (2020)
Keyphrases
- partial order
- gpu accelerated
- multiple sequence alignment
- sequence alignment
- partially ordered
- protein sequences
- total order
- multiple alignment
- memory efficient
- finite element
- computational biology
- pairwise
- real time
- genetic algorithm
- biological sequences
- secondary structure
- dynamic programming
- sequential patterns
- preference relations
- amino acids
- statistical analysis
- evolutionary algorithm
- learning algorithm