ADEPT: a domain independent sequence alignment strategy for gpu architectures.
Muaaz G. AwanJack DeslippeAydin BuluçOguz SelvitopiSteven A. HofmeyrLeonid OlikerKatherine A. YelickPublished in: BMC Bioinform. (2020)
Keyphrases
- domain independent
- sequence alignment
- gpu accelerated
- domain specific
- domain specific knowledge
- protein sequences
- planning problems
- pairwise
- dynamic programming
- domain dependent
- real time
- amino acids
- control knowledge
- general purpose
- search strategy
- binding sites
- state space search
- multiple alignment
- phylogenetic analysis
- statistically significant
- query language
- domain knowledge
- multiple sequence alignment