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Distributed many-to-many protein sequence alignment using sparse matrices.
Oguz Selvitopi
Saliya Ekanayake
Giulia Guidi
Georgios A. Pavlopoulos
Ariful Azad
Aydin Buluç
Published in:
SC (2020)
Keyphrases
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sequence alignment
sparse matrices
pairwise
amino acids
protein sequences
dynamic programming
binding sites
linear algebra
protein structure prediction
multiple sequence alignment
multiple alignment
floating point
genetic algorithm
np hard
comparative genomics