Extreme-Scale Many-against-Many Protein Similarity Search.
Oguz SelvitopiSaliya EkanayakeGiulia GuidiMuaaz G. AwanGeorgios A. PavlopoulosAriful AzadNikos KyrpidesLeonid OlikerKatherine A. YelickAydin BuluçPublished in: SC (2022)
Keyphrases
- similarity search
- mass spectra
- sequence databases
- high dimensional
- metric space
- distance function
- multimedia databases
- query processing
- similarity searching
- knn
- high dimensional data
- efficient similarity search
- similarity measure
- indexing techniques
- cross view
- triangle inequality
- hash functions
- similarity retrieval
- protein structure
- protein sequences
- r tree
- similarity queries
- locality sensitive hashing
- metric access methods
- nearest neighbor
- nearest neighbor search
- dynamic time warping
- amino acids
- principal component analysis
- data sets
- indexing method
- biological sequences
- indexing structure
- database systems
- databases