Miguel A. Andrade-Navarro

Publication Activity (10 Years)

Years Active: 2006-2022
Publications (10 Years): 22

Top Topics

Gene Expression Microarray Data

Evolutionary History

Protein Interaction

Top Venues

Nucleic Acids Res.

Briefings Bioinform.

Publications

Maximilian Sprang, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
Batch effect detection and correction in RNA-seq data using machine-learning-based automated assessment of quality. BMC Bioinform. 23 (1) (2022)
Pablo Mier, Carlos A. Elena-Real, Juan Cortés, Pau Bernadó, Miguel A. Andrade-Navarro
The sequence context in poly-alanine regions: structure, function and conservation. Bioinform. 38 (21) (2022)
Lisanna Paladin, Martina Bevilacqua, Sara Errigo, Damiano Piovesan, Ivan Micetic, Marco Necci, Alexander Miguel Monzon, Maria Laura Fabre, José Luis López, Juliet F. Nilsson, Javier Ríos, Pablo Lorenzano Menna, Maia Cabrera, Martin Gonzalez Buitron, Mariane Gonçalves Kulik, Sebastian Fernandez Alberti, María Silvina Fornasari, Gustavo D. Parisi, Antonio Lagares, Layla Hirsh, Miguel A. Andrade-Navarro, Andrey V. Kajava, Silvio C. E. Tosatto
RepeatsDB in 2021: improved data and extended classification for protein tandem repeat structures. Nucleic Acids Res. 49 (Database-Issue) (2021)
Piyush More, Laura Bindila, Philipp Wild, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
LipiDisease: associate lipids to diseases using literature mining. Bioinform. 37 (21) (2021)
Alejandro Rubio, Pablo Mier, Miguel A. Andrade-Navarro, Andrés Garzón, Juan Jiménez, Antonio J. Pérez-Pulido
CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats. Database J. Biol. Databases Curation 2020 (2020)
Pablo Mier, Lisanna Paladin, Stella Tamana, Sophia Petrosian, Borbála Hajdu-Soltész, Annika Urbanek, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg, Pau Bernadó, Zoltán Gáspári, Christos A. Ouzounis, Vasilis J. Promponas, Andrey V. Kajava, John M. Hancock, Silvio C. E. Tosatto, Zsuzsanna Dosztányi, Miguel A. Andrade-Navarro
Disentangling the complexity of low complexity proteins. Briefings Bioinform. 21 (2) (2020)
Sophie Burkhardt, Julia Siekiera, Josua Glodde, Miguel A. Andrade-Navarro, Stefan Kramer
Towards Identifying Drug Side Effects from Social Media Using Active Learning andCrowd Sourcing. PSB (2020)
Gregorio Alanis-Lobato, Jannik S. Möllmann, Martin H. Schaefer, Miguel A. Andrade-Navarro
MIPPIE: the mouse integrated protein-protein interaction reference. Database J. Biol. Databases Curation 2020 (2020)
Patryk Jarnot, Joanna Ziemska-Legiecka, Laszlo Dobson, Matthew Merski, Pablo Mier, Miguel A. Andrade-Navarro, John M. Hancock, Zsuzsanna Dosztányi, Lisanna Paladin, Marco Necci, Damiano Piovesan, Silvio C. E. Tosatto, Vasilis J. Promponas, Marcin Grynberg, Aleksandra Gruca
PlaToLoCo: the first web meta-server for visualization and annotation of low complexity regions in proteins. Nucleic Acids Res. 48 (Webserver-Issue) (2020)
Pablo Mier, Miguel A. Andrade-Navarro
Traitpedia: a collaborative effort to gather species traits. Bioinform. 35 (6) (2019)
Pablo Mier, Miguel A. Andrade-Navarro
Toward completion of the Earth's proteome: an update a decade later. Briefings Bioinform. 20 (2) (2019)
Pablo Mier, Antonio J. Pérez-Pulido, Miguel A. Andrade-Navarro
Automated selection of homologs to track the evolutionary history of proteins. BMC Bioinform. 19 (1) (2018)
Franziska Härtner, Miguel A. Andrade-Navarro, Gregorio Alanis-Lobato
Geometric characterisation of disease modules. Appl. Netw. Sci. 3 (1) (2018)
Gregorio Alanis-Lobato, Pablo Mier, Miguel A. Andrade-Navarro
The latent geometry of the human protein interaction network. Bioinform. 34 (16) (2018)
Michael Sadovsky, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Yury Yakubailik, Natalia Rudenko
Lost Strings in Genomes: What Sense Do They Make? IWBBIO (2) (2017)
Lisanna Paladin, Layla Hirsh, Damiano Piovesan, Miguel A. Andrade-Navarro, Andrey V. Kajava, Silvio C. E. Tosatto
RepeatsDB 2.0: improved annotation, classification, search and visualization of repeat protein structures. Nucleic Acids Res. 45 (Database-Issue) (2017)
Marco Frasca, Jean-Fred Fontaine, Giorgio Valentini, Marco Mesiti, Marco Notaro, Dario Malchiodi, Miguel A. Andrade-Navarro
Disease-Genes Must Guide Data Source Integration in the Gene Prioritization Process. CIBB (2017)
Gregorio Alanis-Lobato, Miguel A. Andrade-Navarro, Martin H. Schaefer
HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks. Nucleic Acids Res. 45 (Database-Issue) (2017)
Pablo Mier, Miguel A. Andrade-Navarro
dAPE: a web server to detect homorepeats and follow their evolution. Bioinform. 33 (8) (2017)
Pablo Mier, Miguel A. Andrade-Navarro
FastaHerder2: Four Ways to Research Protein Function and Evolution with Clustering and Clustered Databases. J. Comput. Biol. 23 (4) (2016)
Gregorio Alanis-Lobato, Miguel A. Andrade-Navarro
Distance Distribution between Complex Network Nodes in Hyperbolic Space. Complex Syst. 25 (3) (2016)
Gregorio Alanis-Lobato, Pablo Mier, Miguel A. Andrade-Navarro
Manifold learning and maximum likelihood estimation for hyperbolic network embedding. Appl. Netw. Sci. 1 (2016)
Harald Stachelscheid, Stefanie Seltmann, Fritz Lekschas, Jean-Fred Fontaine, Nancy Mah, Mariana L. Neves, Miguel A. Andrade-Navarro, Ulf Leser, Andreas Kurtz
CellFinder: a cell data repository. Nucleic Acids Res. 42 (Database-Issue) (2014)
Apichat Suratanee, Martin H. Schaefer, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen. PLoS Comput. Biol. 10 (9) (2014)
José A. Gijón-Correas, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
Alkemio: association of chemicals with biomedical topics by text and data mining. Nucleic Acids Res. 42 (Webserver-Issue) (2014)
Sander Bollen, Mathias Leddin, Miguel A. Andrade-Navarro, Nancy Mah
CAFE: an R package for the detection of gross chromosomal abnormalities from gene expression microarray data. Bioinform. 30 (10) (2014)
Klaus Wethmar, Adriano Barbosa-Silva, Miguel A. Andrade-Navarro, Achim Leutz
uORFdb - a comprehensive literature database on eukaryotic uORF biology. Nucleic Acids Res. 42 (Database-Issue) (2014)
Arvind Mer, Miguel A. Andrade-Navarro
A novel approach for protein subcellular location prediction using amino acid exposure. BMC Bioinform. 14 (2013)
Martin H. Schaefer, Tiago J. S. Lopes, Nancy Mah, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Caroline Louis-Jeune, Amie J. Eisfeld, Gabriele Neumann, Carol Perez-Iratxeta, Yoshihiro Kawaoka, Hiroaki Kitano, Miguel A. Andrade-Navarro
Adding Protein Context to the Human Protein-Protein Interaction Network to Reveal Meaningful Interactions. PLoS Comput. Biol. 9 (1) (2013)
Joachim von Eichborn, Mathias Dunkel, Björn O. Gohlke, Sarah C. Preissner, Michael F. Hoffmann, Jakob M. J. Bauer, J. Douglas Armstrong, Martin H. Schaefer, Miguel A. Andrade-Navarro, Nicolas Le Novère, Michael D. R. Croning, Seth G. N. Grant, Pim van Nierop, August B. Smit, Robert Preissner
SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations. Nucleic Acids Res. 41 (Database-Issue) (2013)
Francisco M. Ortuño Guzman, Ignacio Rojas, Miguel A. Andrade-Navarro, Jean-Fred Fontaine
Using cited references to improve the retrieval of related biomedical documents. BMC Bioinform. 14 (2013)
Miguel A. Andrade-Navarro, Gareth A. Palidwor, Carolina Perez-Iratxeta
Peer2ref: a peer-reviewer finding web tool that uses author disambiguation. BioData Min. 5 (2012)
Tiago J. S. Lopes, Martin H. Schaefer, Jason E. Shoemaker, Yukiko Matsuoka, Jean-Fred Fontaine, Gabriele Neumann, Miguel A. Andrade-Navarro, Yoshihiro Kawaoka, Hiroaki Kitano
Tissue-specific subnetworks and characteristics of publicly available human protein interaction databases. Bioinform. 27 (17) (2011)
David Fournier, Miguel A. Andrade-Navarro
PDBpaint, a visualization webservice to tag protein structures with sequence annotations. Bioinform. 27 (18) (2011)
Jean-Fred Fontaine, Florian Priller, Adriano Barbosa-Silva, Miguel A. Andrade-Navarro
Génie: literature-based gene prioritization at multi genomic scale. Nucleic Acids Res. 39 (Web-Server-Issue) (2011)
Adriano Barbosa-Silva, Jean-Fred Fontaine, Elisa R. Donnard, Fernanda Stussi, José Miguel Ortega, Miguel A. Andrade-Navarro
PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries. BMC Bioinform. 12 (2011)
Adriano Barbosa-Silva, Theodoros G. Soldatos, Ivan L. F. Magalhães, Georgios A. Pavlopoulos, Jean-Fred Fontaine, Miguel A. Andrade-Navarro, Reinhard Schneider, José Miguel Ortega
LAITOR - Literature Assistant for Identification of Terms co-Occurrences and Relationships. BMC Bioinform. 11 (2010)
Gareth A. Palidwor, Sergey Shcherbinin, Matthew R. Huska, Tamas Rasko, Ulrich Stelzl, Anup Arumughan, Raphaele Foulle, Pablo Porras, Luis Sánchez-Pulido, Erich E. Wanker, Miguel A. Andrade-Navarro
Detection of Alpha-Rod Protein Repeats Using a Neural Network and Application to Huntingtin. PLoS Comput. Biol. 5 (3) (2009)
Jean-Fred Fontaine, Adriano Barbosa-Silva, Martin H. Schaefer, Matthew R. Huska, Enrique M. Muro, Miguel A. Andrade-Navarro
MedlineRanker: flexible ranking of biomedical literature. Nucleic Acids Res. 37 (Web-Server-Issue) (2009)
Shenggang Li, Miguel A. Andrade-Navarro, David Sankoff
A Customized Class of Functions for Modeling and Clustering Gene Expression Profiles in Embryonic Stem Cells. BSB (2008)
Carolina Perez-Iratxeta, Miguel A. Andrade-Navarro, Jonathan D. Wren
Evolving research trends in bioinformatics. Briefings Bioinform. 8 (2) (2007)
Carolina Perez-Iratxeta, Peer Bork, Miguel A. Andrade-Navarro
Update of the G2D tool for prioritization of gene candidates to inherited diseases. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Matthew R. Huska, Henrik Buschmann, Miguel A. Andrade-Navarro
BiasViz: visualization of amino acid biased regions in protein alignments. Bioinform. 23 (22) (2007)
Gareth A. Palidwor, Emmanuel G. Reynaud, Miguel A. Andrade-Navarro
Taxonomic colouring of phylogenetic trees of protein sequences. BMC Bioinform. 7 (2006)
Enrique M. Muro, Carolina Perez-Iratxeta, Miguel A. Andrade-Navarro
Amplification of the Gene Ontology annotation of Affymetrix probe sets. BMC Bioinform. 7 (2006)