Marcus Oswald

Publication Activity (10 Years)

Years Active: 1998-2022
Publications (10 Years): 3

Top Topics

Gene Expression

Gene Regulatory

Network Topology

Top Venues

PLoS Comput. Biol.

Math. Methods Oper. Res.

Publications

Kulwadee Thanamit, Franziska Hörhold, Marcus Oswald, Rainer König
Linear programming based gene expression model (LPM-GEM) predicts the carbon source for Bacillus subtilis. BMC Bioinform. 23 (1) (2022)
Franziska Hörhold, David Eisel, Marcus Oswald, Amol Kolte, Daniela Röll, Wolfram Osen, Stefan B. Eichmüller, Rainer König
Reprogramming of macrophages employing gene regulatory and metabolic network models. PLoS Comput. Biol. 16 (2) (2020)
Alexandra Poos, Theresa Kordaß, Amol Kolte, Volker Ast, Marcus Oswald, Karsten Rippe, Rainer König
Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach. BMC Bioinform. 20 (1) (2019)
Rosario M. Piro, Stefan Wiesberg, Gunnar Schramm, Nico Rebel, Marcus Oswald, Roland Eils, Gerhard Reinelt, Rainer König
Network topology-based detection of differential gene regulation and regulatory switches in cell metabolism and signaling. BMC Syst. Biol. 8 (2014)
Apichat Suratanee, Martin H. Schaefer, Matthew J. Betts, Zita Soons, Heiko A. Mannsperger, Nathalie Harder, Marcus Oswald, Markus Gipp, Ellen Ramminger, Guillermo Marcus Martinez, Reinhard Männer, Karl Rohr, Erich E. Wanker, Robert B. Russell, Miguel A. Andrade-Navarro, Roland Eils, Rainer König
Characterizing Protein Interactions Employing a Genome-Wide siRNA Cellular Phenotyping Screen. PLoS Comput. Biol. 10 (9) (2014)
József Békési, Gábor Galambos, Michael N. Jung, Marcus Oswald, Gerhard Reinelt
A branch-and-bound algorithm for the coupled task problem. Math. Methods Oper. Res. 80 (1) (2014)
Theresa Schacht, Marcus Oswald, Roland Eils, Stefan B. Eichmüller, Rainer König
Estimating the activity of transcription factors by the effect on their target genes. Bioinform. 30 (17) (2014)
Angel Corberán, Marcus Oswald, Isaac Plana, Gerhard Reinelt, José M. Sanchis
New results on the Windy Postman Problem. Math. Program. 132 (1-2) (2012)
Marcus Oswald, Gerhard Reinelt, Stefan Wiesberg
Exact solution of the 2-dimensional grid arrangement problem. Discret. Optim. 9 (3) (2012)
Alberto Caprara, Marcus Oswald, Gerhard Reinelt, Robert Schwarz, Emiliano Traversi
Optimal linear arrangements using betweenness variables. Math. Program. Comput. 3 (3) (2011)
Steffen Rebennack, Marcus Oswald, Dirk Oliver Theis, Hanna Seitz, Gerhard Reinelt, Panos M. Pardalos
A Branch and Cut solver for the maximum stable set problem. J. Comb. Optim. 21 (4) (2011)
Gunnar Schramm, Stefan Wiesberg, Nicolle Diessl, Anna-Lena Kranz, Vitalia Sagulenko, Marcus Oswald, Gerhard Reinelt, Frank Westermann, Roland Eils, Rainer König
PathWave: discovering patterns of differentially regulated enzymes in metabolic pathways. Bioinform. 26 (9) (2010)
Christoph Buchheim, Frauke Liers, Marcus Oswald
Speeding up IP-based algorithms for constrained quadratic 0-1 optimization. Math. Program. 124 (1-2) (2010)
József Békési, Gábor Galambos, Marcus Oswald, Gerhard Reinelt
Improved analysis of an algorithm for the coupled task problem with UET jobs. Oper. Res. Lett. 37 (2) (2009)
Marcus Oswald, Gerhard Reinelt
The simultaneous consecutive ones problem. Theor. Comput. Sci. 410 (21-23) (2009)
Eva-Maria Surmann, Gunnar Schramm, Stefan Wiesberg, Marcus Oswald, Gerhard Reinelt, Roland Eils, Rainer König
Analyzing the regulation of metabolic pathways in human breast cancer. LWA (2009)
Kitiporn Plaimas, Jan-Phillip Mallm, Marcus Oswald, Fabian Svara, Victor Sourjik, Roland Eils, Rainer König
Machine learning based analyses on metabolic networks supports high-throughput knockout screens. BMC Syst. Biol. 2 (2008)
Christoph Buchheim, Frauke Liers, Marcus Oswald
A Basic Toolbox for Constrained Quadratic 0/1 Optimization. WEA (2008)
Christoph Buchheim, Frauke Liers, Marcus Oswald
Local cuts revisited. Oper. Res. Lett. 36 (4) (2008)
Marcus Oswald, Gerhard Reinelt, Dirk Oliver Theis
On the graphical relaxation of the symmetric traveling salesman polytope. Math. Program. 110 (1) (2007)
Kitiporn Plaimas, Marcus Oswald, Roland Eils, Rainer König
Integrating Genomic and Transcriptomic Data into Graph Based Approaches for Defining Essential Reactions in the Metabolic Network of Escherichia Coli. LWA (2007)
Frank Noé, Marcus Oswald, Gerhard Reinelt
Optimizing in Graphs with Expensive Computation of Edge Weights. OR (2007)
Jonghyun Suh, Sungwon Jung, Martin Pfeifle, Khoa T. Vo, Marcus Oswald, Gerhard Reinelt
Compression of Digital Road Networks. SSTD (2007)
Frank Noé, Marcus Oswald, Gerhard Reinelt, Stefan Fischer, Jeremy C. Smith
Transitions in Octaalanine. Multiscale Model. Simul. 5 (2) (2006)
Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils, Rainer König
Pattern recognition of gene expression data on biochemical networks with simple wavelet transforms. LWA (2006)
Rainer König, Gunnar Schramm, Marcus Oswald, Hanna Seitz, Sebastian Sager, Marc Zapatka, Gerhard Reinelt, Roland Eils
with wavelets transforms. BMC Bioinform. 7 (2006)
Marcus Oswald, Gerhard Reinelt, Dirk Oliver Theis
Not Every GTSP Facet Induces an STSP Facet. IPCO (2005)
Dino Ahr, József Békési, Gábor Galambos, Marcus Oswald, Gerhard Reinelt
An exact algorithm for scheduling identical coupled tasks. Math. Methods Oper. Res. 59 (2) (2004)
Marcus Oswald, Gerhard Reinelt
The weighted consecutive ones problem for a fixed number of rows or columns. Oper. Res. Lett. 31 (3) (2003)
Marcus Oswald, Gerhard Reinelt
Constructing New Facets of the Consecutive Ones Polytope. Combinatorial Optimization (2001)
Marcus Oswald, Gerhard Reinelt
Polyhedral Aspects of the Consecutive Ones Problem. COCOON (2000)
Thomas Christof, Marcus Oswald, Gerhard Reinelt
Consecutive Ones and a Betweenness Problem in Computational Biology. IPCO (1998)