Mariana L. Neves

Publication Activity (10 Years)

Years Active: 2001-2023
Publications (10 Years): 30

Top Topics

Information Extraction

Brazilian Portuguese

Question Answering

Parallel Corpus

Top Venues

CLEF (Working Notes)

Publications

Mariana L. Neves, Antonina Klippert, Fanny Knöspel, Juliane Rudeck, Ailine Stolz, Zsofia Ban, Markus Becker, Kai Diederich, Barbara Grune, Pia Kahnau, Nils Ohnesorge, Johannes Pucher, Gilbert Schönfelder, Bettina Bert, Daniel Butzke
Automatic classification of experimental models in biomedical literature to support searching for alternative methods to animal experiments. J. Biomed. Semant. 14 (1) (2023)
Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Lana Yeganova, Dina Wiemann, Cristian Grozea
Findings of the WMT 2023 Biomedical Translation Shared Task: Evaluation of ChatGPT 3.5 as a Comparison System. WMT (2023)
Mariana L. Neves, Ines Schadock, Beryl Eusemann, Gilbert Schönfelder, Bettina Bert, Daniel Butzke
Is the ranking of PubMed similar articles good enough? An evaluation of text similarity methods for three datasets. BioNLP@ACL (2023)
Mariana L. Neves
Bf3R at SemEval-2023 Task 7: a text similarity model for textual entailment and evidence retrieval in clinical trials and animal studies. SemEval@ACL (2023)
Lana Yeganova, Dina Wiemann, Mariana L. Neves, Federica Vezzani, Amy Siu, Inigo Jauregi Unanue, Maite Oronoz, Nancy Mah, Aurélie Névéol, David Martínez, Rachel Bawden, Giorgio Maria Di Nunzio, Roland Roller, Philippe Thomas, Cristian Grozea, Olatz Perez-de-Viñaspre, Maika Vicente Navarro, Antonio Jimeno-Yepes
Findings of the WMT 2021 Biomedical Translation Shared Task: Summaries of Animal Experiments as New Test Set. WMT@EMNLP (2021)
Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves
MEDLINE as a Parallel Corpus: a Survey to Gain Insight on French-, Spanish- and Portuguese-speaking Authors' Abstract Writing Practice. LREC (2020)
Rachel Bawden, Giorgio Maria Di Nunzio, Cristian Grozea, Inigo Jauregi Unanue, Antonio Jimeno-Yepes, Nancy Mah, David Martínez, Aurélie Névéol, Mariana L. Neves, Maite Oronoz, Olatz Perez-de-Viñaspre, Massimo Piccardi, Roland Roller, Amy Siu, Philippe Thomas, Federica Vezzani, Maika Vicente Navarro, Dina Wiemann, Lana Yeganova
Findings of the WMT 2020 Biomedical Translation Shared Task: Basque, Italian and Russian as New Additional Languages. WMT@EMNLP (2020)
Mariana L. Neves, Daniel Butzke, Antje Dörendahl, Nora Leich, Benedikt Hummel, Gilbert Schönfelder, Barbara Grune
Overview of the CLEF eHealth 2019 Multilingual Information Extraction. CLEF (Working Notes) (2019)
Liadh Kelly, Hanna Suominen, Lorraine Goeuriot, Mariana L. Neves, Evangelos Kanoulas, Dan Li, Leif Azzopardi, René Spijker, Guido Zuccon, Harrisen Scells, João R. M. Palotti
Overview of the CLEF eHealth Evaluation Lab 2019. CLEF (2019)
Liadh Kelly, Lorraine Goeuriot, Hanna Suominen, Mariana L. Neves, Evangelos Kanoulas, René Spijker, Leif Azzopardi, Dan Li, Jimmy, João R. M. Palotti, Guido Zuccon
CLEF eHealth 2019 Evaluation Lab. ECIR (2) (2019)
Rachel Bawden, Kevin Bretonnel Cohen, Cristian Grozea, Antonio Jimeno-Yepes, Madeleine Kittner, Martin Krallinger, Nancy Mah, Aurélie Névéol, Mariana L. Neves, Felipe Soares, Amy Siu, Karin Verspoor, Maika Vicente Navarro
Findings of the WMT 2019 Biomedical Translation Shared Task: Evaluation for MEDLINE Abstracts and Biomedical Terminologies. WMT (3) (2019)
Mariana L. Neves, Daniel Butzke, Barbara Grune
Evaluation of Scientific Elements for Text Similarity in Biomedical Publications. ArgMining@ACL (2019)
Aurélie Névéol, Antonio Jimeno-Yepes, Mariana L. Neves, Karin Verspoor
Parallel Corpora for the Biomedical Domain. LREC (2018)
Diego Moussallem, Thiago Castro Ferreira, Marcos Zampieri, Maria Cláudia Cavalcanti, Geraldo Xexéo, Mariana L. Neves, Axel-Cyrille Ngonga Ngomo
RDF2PT: Generating Brazilian Portuguese Texts from RDF Data. LREC (2018)
Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol, Cristian Grozea, Amy Siu, Madeleine Kittner, Karin Verspoor
Findings of the WMT 2018 Biomedical Translation Shared Task: Evaluation on Medline test sets. WMT (shared task) (2018)
Diego Moussallem, Thiago Castro Ferreira, Marcos Zampieri, Maria Cláudia Cavalcanti, Geraldo Xexéo, Mariana L. Neves, Axel-Cyrille Ngonga Ngomo
RDF2PT: Generating Brazilian Portuguese Texts from RDF Data. CoRR (2018)
Milena Kraus, Julian Niedermeier, Marcel Jankrift, Sören Tietböhl, Toni Stachewicz, Hendrik Folkerts, Matthias Uflacker, Mariana L. Neves
Olelo: a web application for intuitive exploration of biomedical literature. Nucleic Acids Res. 45 (Webserver-Issue) (2017)
Mariana L. Neves
A parallel collection of clinical trials in Portuguese and English. BUCC@ACL (2017)
Maryam Habibi, Leon Weber, Mariana L. Neves, David Luis Wiegandt, Ulf Leser
Deep learning with word embeddings improves biomedical named entity recognition. Bioinform. 33 (14) (2017)
Mariana L. Neves, Hendrik Folkerts, Marcel Jankrift, Julian Niedermeier, Toni Stachewicz, Sören Tietböhl, Milena Kraus, Matthias Uflacker
Olelo: A Question Answering Application for Biomedicine. ACL (System Demonstrations) (2017)
Georg Wiese, Dirk Weissenborn, Mariana L. Neves
Neural Domain Adaptation for Biomedical Question Answering. CoRR (2017)
Antonio Jimeno-Yepes, Aurélie Névéol, Mariana L. Neves, Karin Verspoor, Ondrej Bojar, Arthur Boyer, Cristian Grozea, Barry Haddow, Madeleine Kittner, Yvonne Lichtblau, Pavel Pecina, Roland Roller, Rudolf Rosa, Amy Siu, Philippe Thomas, Saskia Trescher
Findings of the WMT 2017 Biomedical Translation Shared Task. WMT (2017)
Georg Wiese, Dirk Weissenborn, Mariana L. Neves
Neural Question Answering at BioASQ 5B. BioNLP (2017)
Georg Wiese, Dirk Weissenborn, Mariana L. Neves
Neural Domain Adaptation for Biomedical Question Answering. CoNLL (2017)
Mariana L. Neves, Fabian Eckert, Hendrik Folkerts, Matthias Uflacker
Assessing the performance of Olelo, a real-time biomedical question answering application. BioNLP (2017)
Georg Wiese, Dirk Weissenborn, Mariana L. Neves
Neural Question Answering at BioASQ 5B. CoRR (2017)
Ondrej Bojar, Rajen Chatterjee, Christian Federmann, Yvette Graham, Barry Haddow, Matthias Huck, Antonio Jimeno-Yepes, Philipp Koehn, Varvara Logacheva, Christof Monz, Matteo Negri, Aurélie Névéol, Mariana L. Neves, Martin Popel, Matt Post, Raphael Rubino, Carolina Scarton, Lucia Specia, Marco Turchi, Karin Verspoor, Marcos Zampieri
Findings of the 2016 Conference on Machine Translation. WMT (2016)
Mariana L. Neves, Antonio Jimeno-Yepes, Aurélie Névéol
The Scielo Corpus: a Parallel Corpus of Scientific Publications for Biomedicine. LREC (2016)
Frederik Schulze, Mariana L. Neves
Entity-Supported Summarization of Biomedical Abstracts. BioTxtM@COLING 2016 (2016)
Maximilian Grundke, Johannes Jasper, Mariya Perchyk, Jan Philipp Sachse, Ralf Krestel, Mariana L. Neves
TextAI: Enhancing TextAE with Intelligent Annotation Support. SMBM (2016)
Mariana L. Neves
HPI Question Answering System in the BioASQ 2015 Challenge. CLEF (Working Notes) (2015)
Harald Stachelscheid, Stefanie Seltmann, Fritz Lekschas, Jean-Fred Fontaine, Nancy Mah, Mariana L. Neves, Miguel A. Andrade-Navarro, Ulf Leser, Andreas Kurtz
CellFinder: a cell data repository. Nucleic Acids Res. 42 (Database-Issue) (2014)
Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014)
Mariana L. Neves, Ulf Leser
A survey on annotation tools for the biomedical literature. Briefings Bioinform. 15 (2) (2014)
Konrad Herbst, Cindy Fähnrich, Mariana L. Neves, Matthieu-P. Schapranow
Applying In-Memory Technology for Automatic Template Filling in the Clinical Domain. CLEF (Working Notes) (2014)
Mariana L. Neves
HPI in-memory-based Database System in Task 2b of BioASQ. CLEF (Working Notes) (2014)
Philippe Thomas, Mariana L. Neves, Tim Rocktäschel, Ulf Leser
WBI-DDI: Drug-Drug Interaction Extraction using Majority Voting. SemEval@NAACL-HLT (2013)
Mariana L. Neves, Alexander Damaschun, Nancy Mah, Fritz Lekschas, Stefanie Seltmann, Harald Stachelscheid, Jean-Fred Fontaine, Andreas Kurtz, Ulf Leser
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts. Database J. Biol. Databases Curation 2013 (2013)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC Silver Standard Corpus. J. Biomed. Semant. 2 (S-5) (2011)
Yoshinobu Kano, Jari Björne, Filip Ginter, Tapio Salakoski, Ekaterina Buyko, Udo Hahn, K. Bretonnel Cohen, Karin Verspoor, Christophe Roeder, Lawrence E. Hunter, Halil Kilicoglu, Sabine Bergler, Sofie Van Landeghem, Thomas Van Parys, Yves Van de Peer, Makoto Miwa, Sophia Ananiadou, Mariana L. Neves, Alberto D. Pascual-Montano, Arzucan Özgür, Dragomir R. Radev, Sebastian Riedel, Rune Sætre, Hong-Woo Chun, Jin-Dong Kim, Sampo Pyysalo, Tomoko Ohta, Jun'ichi Tsujii
U-Compare bio-event meta-service: compatible BioNLP event extraction services. BMC Bioinform. 12 (2011)
Dietrich Rebholz-Schuhmann, Antonio Jimeno-Yepes, Chen Li, Senay Kafkas, Ian Lewin, Ning Kang, Peter T. Corbett, David Milward, Ekaterina Buyko, Elena Beisswanger, Kerstin Hornbostel, Alexandre Kouznetsov, René Witte, Jonas B. Laurila, Christopher J. O. Baker, Cheng-Ju Kuo, Simon Clematide, Fabio Rinaldi, Richárd Farkas, György Móra, Kazuo Hara, Laura Inés Furlong, Michael Rautschka, Mariana L. Neves, Alberto D. Pascual-Montano, Qi Wei, Nigel Collier, Md. Faisal Mahbub Chowdhury, Alberto Lavelli, Rafael Berlanga Llavori, Roser Morante, Vincent Van Asch, Walter Daelemans, José Luís Marina, Erik M. van Mulligen, Jan A. Kors, Udo Hahn
Assessment of NER solutions against the first and second CALBC silver standard corpus. Semantic Mining in Biomedicine (2010)
Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano
Moara: a Java library for extracting and normalizing gene and protein mentions. BMC Bioinform. 11 (2010)
Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano
Extraction of biomedical events using case-based reasoning. BioNLP@HLT-NAACL (Shared Task) (2009)
Mariana L. Neves, Monica Chagoyen, José María Carazo, Alberto D. Pascual-Montano
CBR-Tagger: a case-based reasoning approach to the gene/protein mention problem. BioNLP (2008)
Mariana L. Neves, José María Carazo, Alberto D. Pascual-Montano
Extracting and Normalizing Gene/Protein Mentions with the Flexible and Trainable Moara Java Library. BioLINK@ISMB/ECCB (2008)
Ramón Díaz-Uriarte, Andreu Alibés, Edward R. Morrissey, Andrés Cañada, Oscar M. Rueda, Mariana L. Neves
Asterias: integrated analysis of expression and aCGH data using an open-source, web-based, parallelized software suite. Nucleic Acids Res. 35 (Web-Server-Issue) (2007)
Mariana L. Neves, Flávia de Almeida Barros
Citationfinder: a knowledge-based system for web pages of citations classification. SMC (2001)