Carolyn J. Mattingly

Publication Activity (10 Years)

Years Active: 2005-2023
Publications (10 Years): 8

Top Topics

Dependency Trees

Update Operations

Top Venues

Database J. Biol. Databases Curation

Nucleic Acids Res.

Publications

Allan Peter Davis, Thomas C. Wiegers, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Carolyn J. Mattingly
Comparative Toxicogenomics Database (CTD): update 2023. Nucleic Acids Res. 51 (D1) (2023)
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
Comparative Toxicogenomics Database (CTD): update 2021. Nucleic Acids Res. 49 (Database-Issue) (2021)
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
The Comparative Toxicogenomics Database: update 2019. Nucleic Acids Res. 47 (Database-Issue) (2019)
Allan Peter Davis, Cynthia J. Grondin, Robin J. Johnson, Daniela Sciaky, Benjamin L. King, Roy McMorran, Jolene Wiegers, Thomas C. Wiegers, Carolyn J. Mattingly
The Comparative Toxicogenomics Database: update 2017. Nucleic Acids Res. 45 (Database-Issue) (2017)
D. Pelletier, Thomas C. Wiegers, Ahmed Enayetallah, C. Kibbey, Mark Gosink, P. Koza-Taylor, Carolyn J. Mattingly, M. Lawton
ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings. Database J. Biol. Databases Curation 2016 (2016)
Jiao Li, Yueping Sun, Robin J. Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Thomas C. Wiegers, Zhiyong Lu
BioCreative V CDR task corpus: a resource for chemical disease relation extraction. Database J. Biol. Databases Curation 2016 (2016)
Chih-Hsuan Wei, Yifan Peng, Robert Leaman, Allan Peter Davis, Carolyn J. Mattingly, Jiao Li, Thomas C. Wiegers, Zhiyong Lu
Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task. Database J. Biol. Databases Curation 2016 (2016)
Allan Peter Davis, Cynthia J. Grondin, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Thomas C. Wiegers, Carolyn J. Mattingly
The Comparative Toxicogenomics Database's 10th year anniversary: update 2015. Nucleic Acids Res. 43 (Database-Issue) (2015)
Donald C. Comeau, Riza Theresa Batista-Navarro, Hong-Jie Dai, Rezarta Islamaj Dogan, Antonio Jimeno-Yepes, Ritu Khare, Zhiyong Lu, Hernani Marques, Carolyn J. Mattingly, Mariana L. Neves, Yifan Peng, Rafal Rak, Fabio Rinaldi, Richard Tzong-Han Tsai, Karin Verspoor, Thomas C. Wiegers, Cathy H. Wu, W. John Wilbur
BioC interoperability track overview. Database J. Biol. Databases Curation 2014 (2014)
Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
Web services-based text-mining demonstrates broad impacts for interoperability and process simplification. Database J. Biol. Databases Curation 2014 (2014)
Allan Peter Davis, Cynthia G. Murphy, Robin J. Johnson, Jean M. Lay, Kelley Lennon-Hopkins, Cynthia A. Saraceni-Richards, Daniela Sciaky, Benjamin L. King, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
The Comparative Toxicogenomics Database: update 2013. Nucleic Acids Res. 41 (Database-Issue) (2013)
Allan Peter Davis, Thomas C. Wiegers, Phoebe M. Roberts, Benjamin L. King, Jean M. Lay, Kelley Lennon-Hopkins, Daniela Sciaky, Robin J. Johnson, Heather Keating, Nigel Greene, Robert Hernandez, Kevin J. McConnell, Ahmed Enayetallah, Carolyn J. Mattingly
A CTD-Pfizer collaboration: manual curation of 88 000 scientific articles text mined for drug-disease and drug-phenotype interactions. Database J. Biol. Databases Curation 2013 (2013)
Susan M. Bello, Joel E. Richardson, Allan Peter Davis, Thomas C. Wiegers, Carolyn J. Mattingly, Mary E. Dolan, Cynthia L. Smith, Judith A. Blake, Janan T. Eppig
Disease model curation improvements at Mouse Genome Informatics. Database J. Biol. Databases Curation 2012 (2012)
Thomas C. Wiegers, Allan Peter Davis, Carolyn J. Mattingly
Collaborative biocuration - text-mining development task for document prioritization for curation. Database J. Biol. Databases Curation 2012 (2012)
Cathy H. Wu, Cecilia N. Arighi, Kevin Bretonnel Cohen, Lynette Hirschman, Martin Krallinger, Zhiyong Lu, Carolyn J. Mattingly, Alfonso Valencia, Thomas C. Wiegers, W. John Wilbur
BioCreative-2012 Virtual Issue. Database J. Biol. Databases Curation 2012 (2012)
Allan Peter Davis, Robin J. Johnson, Kelley Lennon-Hopkins, Daniela Sciaky, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database. Database J. Biol. Databases Curation 2012 (2012)
Allan Peter Davis, Thomas C. Wiegers, Michael C. Rosenstein, Carolyn J. Mattingly
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database. Database J. Biol. Databases Curation 2012 (2012)
Allan Peter Davis, Benjamin L. King, Susan Mockus, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
The Comparative Toxicogenomics Database: update 2011. Nucleic Acids Res. 39 (Database-Issue) (2011)
Allan Peter Davis, Thomas C. Wiegers, Cynthia G. Murphy, Carolyn J. Mattingly
The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database. Database J. Biol. Databases Curation 2011 (2011)
Susan M. Bello, Allan Peter Davis, Thomas C. Wiegers, Mary E. Dolan, Cynthia L. Smith, Joel E. Richardson, Judith A. Blake, Carolyn J. Mattingly, Janan T. Eppig
Waiting for a Robust Disease Ontology: A Merger of OMIM and MeSH as a Practical Interim Solution. ICBO (2011)
Allan Peter Davis, Cynthia G. Murphy, Cynthia A. Saraceni-Richards, Michael C. Rosenstein, Thomas C. Wiegers, Carolyn J. Mattingly
Comparative Toxicogenomics Database: a knowledgebase and discovery tool for chemical-gene-disease networks. Nucleic Acids Res. 37 (Database-Issue) (2009)
Julia M. Gohlke, Reuben Thomas, Yonqing Zhang, Michael C. Rosenstein, Allan Peter Davis, Cynthia G. Murphy, Kevin G. Becker, Carolyn J. Mattingly, Christopher J. Portier
Genetic and environmental pathways to complex diseases. BMC Syst. Biol. 3 (2009)
Thomas C. Wiegers, Allan Peter Davis, K. Bretonnel Cohen, Lynette Hirschman, Carolyn J. Mattingly
Text mining and manual curation of chemical-gene-disease networks for the Comparative Toxicogenomics Database (CTD). BMC Bioinform. 10 (2009)
Clare Bates Congdon, Joseph C. Aman, Gerardo M. Nava, H. Rex Gaskins, Carolyn J. Mattingly
An Evaluation of Information Content as a Metric for the Inference of Putative Conserved Noncoding Regions in DNA Sequences Using a Genetic Algorithms Approach. IEEE ACM Trans. Comput. Biol. Bioinform. 5 (1) (2008)
Clare Bates Congdon, H. Rex Gaskins, Gerardo M. Nava, Carolyn J. Mattingly
Towards Interactive Visualization for Exploring Conserved Motifs in Noncoding DNA Sequence. FBIT (2007)
Clare Bates Congdon, Charles Fizer, Noah W. Smith, H. Rex Gaskins, Joseph C. Aman, Gerardo M. Nava, Carolyn J. Mattingly
Preliminary Results for GAMI: A Genetic Algorithms Approach to Motif Inference. CIBCB (2005)